BMRB: 19164

solution structure of cerebral dopamine neurotrophic factor (CDNF)

Authors

Latge, C., Cabral, K.M.S., Raymundo, D.P., Foguel, D., Herrmann, T., Almeida, M.DA.SILVA., Al, M.

Assembly

cerebral dopamine neurotrophic factor (CDNF)

Entity

1. cerebral dopamine neurotrophic factor (CDNF) (polymer, Thiol state: all disulfide bound), 161 monomers, 18325.09 Da Detail

QEAGGRPGAD CEVCKEFLNR FYKSLIDRGV NFSLDTIEKE LISFCLDTKG KENRLCYYLG ATKDAATKIL SEVTRPMSVH MPAMKICEKL KKLDSQICEL KYEKTLDLAS VDLRKMRVAE LKQILHSWGE ECRACAEKTD YVNLIQELAP KYAATHPKTE L

Formula weight

18325.09 Da

Entity Connection

disulfide 4 Detail

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ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS11:SG	1:CYS98:SG
2	disulfide	sing	1:CYS14:SG	1:CYS87:SG
3	disulfide	sing	1:CYS132:SG	1:CYS135:SG
4	disulfide	sing	1:CYS45:SG	1:CYS56:SG

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

CNS USING RECOORD SCRIPTS

Data set

assigned_chemical_shifts, heteronucl_NOEs, heteronucl_T1_relaxation, heteronucl_T2_relaxation

Chem. Shift Complete

Sequence coverage: 99.4 %, Completeness: 95.9 %, Completeness (bb): 94.6 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	95.9 % (1829 of 1907)	96.4 % (963 of 999)	96.4 % (716 of 743)	90.9 % (150 of 165)
Backbone	94.6 % (904 of 956)	95.4 % (309 of 324)	95.2 % (453 of 476)	91.0 % (142 of 156)
Sidechain	97.5 % (1077 of 1105)	96.9 % (654 of 675)	98.6 % (415 of 421)	88.9 % (8 of 9)
Aromatic	92.9 % (104 of 112)	92.9 % (52 of 56)	92.7 % (51 of 55)	100.0 % (1 of 1)
Methyl	100.0 % (180 of 180)	100.0 % (90 of 90)	100.0 % (90 of 90)

1. CEREBRAL DOPAMINE NEUROTROPHIC FACTOR

QEAGGRPGAD CEVCKEFLNR FYKSLIDRGV NFSLDTIEKE LISFCLDTKG KENRLCYYLG ATKDAATKIL SEVTRPMSVH MPAMKICEKL KKLDSQICEL KYEKTLDLAS VDLRKMRVAE LKQILHSWGE ECRACAEKTD YVNLIQELAP KYAATHPKTE L

Show sample condition

Sample

Solvent system 10% D20, Pressure 1.000 atm, Temperature 298.000 K, pH 6.000, Details [U-13C; U-15N], 0.7 mM; MES 20 mM; NaCl 150 mM; NaN3 5 mM

#	Name	Isotope labeling	Type	Concentration
1	CEREBRAL DOPAMINE NEUROTROPHIC FACTOR	[U-13C; U-15N]		0.7 mM
2	MES	natural abundance		20 mM
3	NaCl	natural abundance		150 mM
4	NaN3	natural abundance		5 mM

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LACS Plot; CA

Referencing offset: 0.02 ppm, Outliers: 3 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	internal	indirect	0.0
1H	DSS	methyl protons	-0.103 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	internal	indirect	0.0

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LACS Plot; CB

Referencing offset: 0.02 ppm, Outliers: 3 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	internal	indirect	0.0
1H	DSS	methyl protons	-0.103 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	internal	indirect	0.0

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LACS Plot; HA

Referencing offset: 0.01 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	internal	indirect	0.0
1H	DSS	methyl protons	-0.103 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	internal	indirect	0.0

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LACS Plot; CO

Referencing offset: -0.13 ppm, Outliers: 2 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	internal	indirect	0.0
1H	DSS	methyl protons	-0.103 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	internal	indirect	0.0

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Protein Blocks Logo

Calculated from 20 models in PDB: 4BIT, Strand ID: A Detail

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Heteronucl. T₁

81 T₁ values in 1 lists
Coherence Iz, Field strength (¹H) 800 MHz, Pressure 1.000 atm, Temperature 298.000 K, pH 6.000 Detail

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Pressure 1.000 atm, Temperature 298.000 K, pH 6.000

Experiment name HSQC

Heteronucl. T₂

81 T₂ values in 1 lists
Coherence I(+,-), Field strength (¹H) 800 MHz, Pressure 1.000 atm, Temperature 298.000 K, pH 6.000 Detail

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Pressure 1.000 atm, Temperature 298.000 K, pH 6.000

Experiment name HSQC

Heteronucl. NOE

122 NOE values in 1 lists
Value type peak height, Field strength (¹H) 600 MHz, Pressure 1.000 atm, Temperature 298.000 K, pH 6.000 Detail

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Pressure 1.000 atm, Temperature 298.000 K, pH 6.000

Experiment name HSQC

Heteronucl. T₁/T₂

81 T₁/T₂ values in 1 lists
Field strength (¹H) 800 MHz, Pressure 1.000 atm, Temperature 298.000 K, pH 6.000 Detail

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Pressure 1.000 atm, Temperature 298.000 K, pH 6.000

Release date

2015-06-18

Citation

(1)H-, (13)C- and (15)N-NMR assignment of the N-terminal domain of human cerebral dopamine neurotrophic factor (CDNF)
Latge, C., Cabral, K.M.S., Almeida, M.S., Foguel, D.
Biomol. NMR Assign. (2013), 7, 101-103, PubMed 22528768 , DOI 10.1007/s12104-012-9388-8 , Abstract

Related entities 1. cerebral dopamine neurotrophic factor (CDNF), : 1 : 2 : 31 entities Detail

Experiments performed 12 experiments Detail