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BMRB: 19312

2M9W

Solution NMR Structure of Transcription Factor GATA-4 from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR4783B

Authors

Xu, X., Eletsky, A., Lee, D., Kohn, E., Janjua, H., Xiao, R., Acton, T.B., Everett, J.K., Montelione, G.T., Szyperski, T.

Assembly

hr4784b

Entity

1. HR4783B (polymer, Thiol state: all other bound), 63 monomers, 7059.177 Da Detail

SHMSASRRVG LSCANCQTTT TTLWRRNAEG EPVCNACGLY MKLHGVPRPL AMRKEGIQTR KRK

2. ZINC ION (non-polymer, Thiol state: not present), 65.409 Da

Total weight

7124.586 Da

Max. entity weight

7059.177 Da

Entity Connection

covalent 4 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	covalent	sing	1:CYS13:SG	2:ZN1:ZN
2	covalent	sing	1:CYS16:SG	2:ZN1:ZN
3	covalent	sing	1:CYS34:SG	2:ZN1:ZN
4	covalent	sing	1:CYS37:SG	2:ZN1:ZN

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts, spectral_peak_list

Chem. Shift Complete

Sequence coverage: 96.8 %, Completeness: 89.1 %, Completeness (bb): 91.9 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	89.1 % (639 of 717)	86.0 % (326 of 379)	93.0 % (253 of 272)	90.9 % (60 of 66)
Backbone	91.9 % (342 of 372)	90.6 % (116 of 128)	93.5 % (172 of 184)	90.0 % (54 of 60)
Sidechain	87.3 % (352 of 403)	83.7 % (210 of 251)	93.2 % (136 of 146)	100.0 % (6 of 6)
Aromatic	100.0 % (28 of 28)	100.0 % (14 of 14)	100.0 % (13 of 13)	100.0 % (1 of 1)
Methyl	100.0 % (58 of 58)	100.0 % (29 of 29)	100.0 % (29 of 29)

1. HR4783B

SHMSASRRVG LSCANCQTTT TTLWRRNAEG EPVCNACGLY MKLHGVPRPL AMRKEGIQTR KRK

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5, Details 0.378 mM HR4783B, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	HR4783B.009	[U-100% 13C; U-100% 15N]	0.378 mM
2	sodium chloride	natural abundance	100 mM
3	DTT	natural abundance	5 mM
4	Tris-HCl	natural abundance	10 mM
5	DSS	natural abundance	50 uM
6	sodium azide	natural abundance	0..02 %
7	ZINC ION	natural abundance	50 uM
8	H2O	natural abundance	90 %
9	D2O	natural abundance	10 %

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.5, Details 0.156 mM HR4783B, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
10	HR4783B.009	[U-5% 13C; U-100% 15N]	0.156 mM
11	sodium chloride	natural abundance	100 mM
12	DTT	natural abundance	5 mM
13	Tris-HCl	natural abundance	10 mM
14	DSS	natural abundance	50 uM
15	sodium azide	natural abundance	0..02 %
16	ZINC ION	natural abundance	50 uM
17	H2O	natural abundance	90 %
18	D2O	natural abundance	10 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.13 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.13 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.01 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.17 ppm, Outliers: 3 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2M9W, Strand ID: A Detail

Release date

2013-07-07

Related entities 1. HR4783B, : 1 : 175 entities Detail

Interaction partners 1. HR4783B, : 2 interactors Detail

More details for 2 interactors identified by 2 citations