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Fragment based approach and binding behavior of LFampinB with Lipopolysaccharide:biophysical aspects
Authors
Bhunia, A., Chatterjee, S., Ghosh, A., Jana, J.
Assembly
WR17 LPS
Entity
1. WR17 LPS (polymer, Thiol state: not present), 17 monomers, 2048.389 Da Detail

WKLLSKAQEK FGKNKSR


Formula weight
2048.389 Da
Entity Connection
na 8 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1nasing1:CYS6:SG2:ZN1:ZN
2nasing1:CYS9:SG2:ZN1:ZN
3nasing1:HIS22:NE22:ZN1:ZN
4nasing1:HIS26:NE22:ZN1:ZN
5nasing1:CYS35:SG2:ZN1:ZN
6nasing1:CYS38:SG2:ZN1:ZN
7nasing1:HIS51:NE22:ZN1:ZN
8nasing1:HIS55:NE22:ZN1:ZN

Exptl. method
solution NMR
Refine. method
DGSA-distance geometry simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 71.4 %, Completeness (bb): 100.0 % Detail

Polymer type: polypeptide(L)

Total1H
All71.4 % (90 of 126)71.4 % (90 of 126)
Backbone100.0 % (35 of 35)100.0 % (35 of 35)
Sidechain60.4 % (55 of 91)60.4 % (55 of 91)
Aromatic 0.0 % (0 of 11) 0.0 % (0 of 11)
Methyl100.0 % (5 of 5)100.0 % (5 of 5)

1. entity

WKLLSKAQEK FGKNKSR

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 4.5


#NameIsotope labelingTypeConcentration
1WR17_LPSnatural abundance1.1 mM
2H2Onatural abundance90 %
3D2Onatural abundance10 %

Protein Blocks Logo
Calculated from 10 models in PDB: 2MD1, Strand ID: A Detail


Release date
2013-09-22
Citation
Fragment based approach and binding behavior of LFampinB with Lipopolysaccharide: biophysical aspects
Bhunia, A., Chatterjee, S., Ghosh, A., Jana, J.
Not known
Related entities 1. WR17 LPS, : 1 : 2 : 3 : 92 entities Detail
Interaction partners 1. WR17 LPS, : 4 interactors Detail
Experiments performed 1 experiments Detail
NMR combined restraints 4 contents Detail
Keywords Peptide