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Solution structure of the C-terminally encoded peptide of the model plant host Medicago truncatula - CEP1
Authors
Bobay, B.G., DiGennaro, P., McK. Bird, D.
Assembly
C-terminally encoded peptide of the model plant host Medicago truncatula - CEP1
Entity
1. C-terminally encoded peptide of the model plant host Medicago truncatula - CEP1 (polymer), 15 monomers, 1498.552 Da Detail

AFQXTTPGNS XGVGH


Formula weight
1498.552 Da
Source organism
Medicago truncatula
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 86.7 %, Completeness: 73.6 %, Completeness (bb): 68.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All73.6 % (95 of 129)90.8 % (59 of 65)44.0 % (22 of 50)100.0 % (14 of 14)
Backbone68.4 % (52 of 76)92.9 % (26 of 28)38.9 % (14 of 36)100.0 % (12 of 12)
Sidechain76.2 % (48 of 63)89.2 % (33 of 37)54.2 % (13 of 24)100.0 % (2 of 2)
Aromatic71.4 % (10 of 14)71.4 % (5 of 7)71.4 % (5 of 7)
Methyl60.0 % (6 of 10)80.0 % (4 of 5)40.0 % (2 of 5)

1. entity

AFQXTTPGNS XGVGH

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 273 K, pH 7.0, Details Peptides (4 mg/ml) were dissolved in 90% H2O, 10% D2O (v/v). DSS (4,4-dimethyl-4-silapentane-1-sulfonic acid) was used as an internal standard


#NameIsotope labelingTypeConcentration
1entitynatural abundance4 mg/mL
2DSSnatural abundance10 uM
3H2Onatural abundance90 %
4D20natural abundance10 %

Protein Blocks Logo
Calculated from 10 models in PDB: 2MFO, Strand ID: A Detail


Release date
2013-12-08
Citation
Solution NMR studies of the plant peptide hormone CEP inform function
Bobay, B.G., DiGennaro, P., Scholl, E., Imin, N., Djordjevic, M.A., McK. Bird, D.
FEBS Lett. (2013), 587, 3979-3985, PubMed 24211833 , DOI 10.1016/j.febslet.2013.10.033 ,
Entries sharing articles BMRB: 1 entries Detail
  BMRB: 19555 released on 2013-12-08
    Title Solution structure of the C-terminally encoded peptide of the plant parasitic nematode Meloidogyne hapla - CEP11
Related entities 1. C-terminally encoded peptide of the model plant host Medicago truncatula - CEP1, : 1 : 23 entities Detail
Experiments performed 4 experiments Detail
NMR combined restraints 3 contents Detail
Keywords CEP, CLE, Medicago, peptide, root-knot nematode