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Solution structure of the CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5
Authors
Bobay, B.G., DiGennaro, P.M., Bird, D.MCK.
Assembly
CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5
Entity
1. CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5 (polymer, Thiol state: not present), 12 monomers, 1325.472 Da Detail

RKVPTGSNPQ KN


Formula weight
1325.472 Da
Source organism
Meloidogyne hapla
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 74.8 %, Completeness (bb): 79.4 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All74.8 % (107 of 143)78.5 % (62 of 79)62.7 % (32 of 51)100.0 % (13 of 13)
Backbone79.4 % (54 of 68)100.0 % (23 of 23)60.0 % (21 of 35)100.0 % (10 of 10)
Sidechain72.1 % (62 of 86)69.6 % (39 of 56)74.1 % (20 of 27)100.0 % (3 of 3)
Methyl100.0 % (6 of 6)100.0 % (3 of 3)100.0 % (3 of 3)

1. entity

RKVPTGSNPQ KN

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 273 K, pH 7.0 (±0.1)


#NameIsotope labelingTypeConcentration
1entitynatural abundance4 mg/mL
2sodium chloridenatural abundance137 mM
3potassium chloridenatural abundance2.7 mM
4sodium phosphatenatural abundance10 mM
5potassium phosphatenatural abundance1.8 mM
6H2Onatural abundance90 %
7D2Onatural abundance10 %

Protein Blocks Logo
Calculated from 10 models in PDB: 2MIG, Strand ID: A Detail


Release date
2014-12-21
Citation
Inferring function of CLE peptides from high resolution tertiary structures
DiGennaro, P.G., Bobay, B.M., Bird, D.MCK.
Proc. Natl. Acad. Sci. U.S.A.
Related entities 1. CLAVATA-like encoded peptide of Meloidogyne hapla - MhCLE5, : 1 entities Detail
Experiments performed 4 experiments Detail
NMR combined restraints 3 contents Detail
Keywords Arabidopsis thaliana, CLAVATA, CLE, Meloidogyne, peptide