BMRB: 19863

AFB1 FAPY modified AG(7-deaza)G duplex

Authors

Li, L., Stone, M.

Assembly

AG(7-deaza)G FAPY modified duplex

Entity

1. DNA (5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3') (polymer, Thiol state: not present), 10 monomers, 3452.288 Da Detail

CTAAXXTTCA

2. DNA (5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3') (polymer, Thiol state: not present), 10 monomers, 3106.988 Da Detail

TGAACCTTAG

Total weight

6559.2764 Da

Max. entity weight

3452.288 Da

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 90.0 %, Completeness: 56.8 %, Completeness (bb): 56.3 % Detail

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Polymer type: polydeoxyribonucleotide

	Total	1H
All	56.8 % (100 of 176)	56.8 % (100 of 176)
Suger, PO4	56.3 % (71 of 126)	56.3 % (71 of 126)
Nucleobase	58.0 % (29 of 50)	58.0 % (29 of 50)
Aromatic	63.9 % (23 of 36)	63.9 % (23 of 36)
Methyl	100.0 % (6 of 6)	100.0 % (6 of 6)

1. DNA (5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3')

CTAAXXTTCA

2. DNA (5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3')

TGAACCTTAG

Show sample condition

Sample

Solvent system 100% D2O, Pressure 1 atm, Temperature 283 K, pH 7

#	Name	Isotope labeling	Type	Concentration
1	DNA (5'-D(*CP*TP*AP*AP*(FAG)P*(7GU)P*TP*TP*CP*A)-3')	natural abundance		0.5 mM
2	DNA (5'-D(*TP*GP*AP*AP*CP*CP*TP*TP*AP*G)-3')	natural abundance		0.5 mM
3	Sodium Chloride	natural abundance		100 mM
4	Sodium Phosphate	natural abundance		10 mM
5	EDTA	natural abundance		50 uM

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Release date

2014-09-10

Citation

DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B₁ Adduct
Li, L., Brown, K.L., Ma, R., Stone, M.P.
Chem. Res. Toxicol. (2015), 28, 225-237, PubMed 25587868 , DOI 10.1021/tx5003832 , Abstract

Entries sharing articles BMRB: 3 entries Detail

Experiments performed 2 experiments Detail