BMRB: 19875

Backbone resonance assignments of the pyrin domain of human Pyrin

Authors

Soh, S.L., Smith, S.J., Hill, J.M.

Assembly

Pyrin

Entity

1. Pyrin (polymer, Thiol state: not present), 100 monomers, 11804.40 Da Detail

MAKTPSDHLL STLEELVPYD FEKFKFKLQN TSVQKEHSRI PRSQIQRARP VKMATLLVTY YGEEYAVQLT LQVLRAINQR LLAEELHRAA IQLEHHHHHH

Formula weight

11804.4 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 52.8 %, Completeness (bb): 98.3 % Detail

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Polymer type: polypeptide(D)

	Total	1H	13C	15N
All	52.8 % (650 of 1230)	37.3 % (240 of 643)	65.3 % (314 of 481)	90.6 % (96 of 106)
Backbone	98.3 % (582 of 592)	97.5 % (192 of 197)	99.3 % (297 of 299)	96.9 % (93 of 96)
Sidechain	22.7 % (167 of 737)	10.8 % (48 of 446)	41.3 % (116 of 281)	30.0 % (3 of 10)
Aromatic	10.2 % (10 of 98)	12.2 % (6 of 49)	8.2 % (4 of 49)
Methyl	16.9 % (21 of 124)	11.3 % (7 of 62)	22.6 % (14 of 62)

1. Pyrin

MAKTPSDHLL STLEELVPYD FEKFKFKLQN TSVQKEHSRI PRSQIQRARP VKMATLLVTY YGEEYAVQLT LQVLRAINQR LLAEELHRAA IQLEHHHHHH

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 4.0

#	Name	Isotope labeling	Type	Concentration
1	Pyrin	[U-100% 13C; U-100% 15N]		0.8 mM
2	H2O	natural abundance		90 %
3	D2O	natural abundance		10 %

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LACS Plot; CA

Referencing offset: -0.23 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	water	protons	4.773 ppm	na	indirect	0.2514495
1H	water	protons	4.773 ppm	internal	direct	1.0
15N	water	protons	4.773 ppm	na	indirect	0.101329

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LACS Plot; CB

Referencing offset: -0.23 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	water	protons	4.773 ppm	na	indirect	0.2514495
1H	water	protons	4.773 ppm	internal	direct	1.0
15N	water	protons	4.773 ppm	na	indirect	0.101329

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LACS Plot; HA

Referencing offset: 0.01 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	water	protons	4.773 ppm	na	indirect	0.2514495
1H	water	protons	4.773 ppm	internal	direct	1.0
15N	water	protons	4.773 ppm	na	indirect	0.101329

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LACS Plot; CO

Referencing offset: -0.11 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	water	protons	4.773 ppm	na	indirect	0.2514495
1H	water	protons	4.773 ppm	internal	direct	1.0
15N	water	protons	4.773 ppm	na	indirect	0.101329

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Protein Blocks Logo

Calculated from 10 models in PDB: 2MPC, Strand ID: A Detail

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Release date

2014-03-25

Citation

Identification of multifaceted binding modes for pyrin and ASC pyrin domains gives insights into pyrin inflammasome assembly
Vajjhala, P.R., Kaiser, S., Smith, S.J., Ong, Q., Soh, S.L., Stacey, K.J., Hill, J.M.
J. Biol. Chem. (2014), 289, 23504-23519, PubMed 25006247 , DOI 10.1074/jbc.M114.553305 , Abstract

Related entities 1. Pyrin, : 1 : 2 : 87 entities Detail

Interaction partners 1. Pyrin, : 5 interactors Detail

Experiments performed 7 experiments Detail