Search

Solution structure of the PPIase domain of TbPar42
Authors
Rehic, E., Bayer, P.
Assembly
PPIase domain of TbPar42
Entity
1. PPIase domain of TbPar42 (polymer, Thiol state: not present), 120 monomers, 13499.03 Da Detail

PTERHFYHVL VKHKDVRRPS SLAPRNKGEK ITRSRADAIN LAQAILAQHK ERKTWSLDEF VQVVRDFSEC GSAKRDGDLG MVESGTYTEG FDTVAFSLKS GEVSAPVETE LGVHLIYRVE


Formula weight
13499.03 Da
Source organism
Trypanosoma brucei
Exptl. method
solution NMR
Refine. method
simulated annealing, torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 92.8 %, Completeness (bb): 97.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All92.8 % (1282 of 1382)94.8 % (681 of 718)88.6 % (480 of 542)99.2 % (121 of 122)
Backbone97.6 % (695 of 712)95.1 % (232 of 244)98.9 % (348 of 352)99.1 % (115 of 116)
Sidechain88.9 % (695 of 782)94.3 % (447 of 474)80.1 % (242 of 302)100.0 % (6 of 6)
Aromatic50.9 % (54 of 106)90.6 % (48 of 53) 9.6 % (5 of 52)100.0 % (1 of 1)
Methyl99.2 % (131 of 132)100.0 % (66 of 66)98.5 % (65 of 66)

1. entity

PTERHFYHVL VKHKDVRRPS SLAPRNKGEK ITRSRADAIN LAQAILAQHK ERKTWSLDEF VQVVRDFSEC GSAKRDGDLG MVESGTYTEG FDTVAFSLKS GEVSAPVETE LGVHLIYRVE

Sample #1

Solvent system 90% H2O/10% D2O, Temperature 273 K, pH 6.26


#NameIsotope labelingTypeConcentration
1PPIase domain of TbPar42natural abundance500.0 ~ 550.0 uM
2potassium phosphatenatural abundance50 mM
3DSSnatural abundance50 uM
4H2Onatural abundance90 %
5D2Onatural abundance10 %
Sample #2

Solvent system 99.9% D2O, Temperature 273 K, pH 6.26


#NameIsotope labelingTypeConcentration
6PPIase domain of TbPar42natural abundance500.0 ~ 550.0 uM
7potassium phosphatenatural abundance50 mM
8DSSnatural abundance50 uM
9D20natural abundance99.9 %
Sample #3

Solvent system 90% H2O/10% D2O, Temperature 273 K, pH 6.26


#NameIsotope labelingTypeConcentration
10PPIase domain of TbPar42[U-100% 13C; U-100% 15N]500.0 ~ 550.0 uM
11potassium phosphatenatural abundance50 mM
12DSSnatural abundance50 uM
13H2Onatural abundance90 %
14D2Onatural abundance10 %
Sample #4

Solvent system 90% H2O/10% D2O, Temperature 273 K, pH 6.26


#NameIsotope labelingTypeConcentration
19PPIase domain of TbPar42[U-100% 15N]500.0 ~ 550.0 uM
20potassium phosphatenatural abundance50 mM
21DSSnatural abundance50 uM
22H2Onatural abundance90 %
23D20natural abundance10 %
Sample #5

Solvent system 90% H2O/10% D2O, Temperature 273 K, pH 6.26


#NameIsotope labelingTypeConcentration
24PPIase domain of TbPar42[U-100% 13C]500.0 ~ 550.0 uM
25potassium phosphatenatural abundance50 mM
26DSSnatural abundance50 uM
27H2Onatural abundance90 %
28D2Onatural abundance10 %

LACS Plot; CA
Referencing offset: 0.26 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: 0.26 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: 0.01 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.12 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 2MNT, Strand ID: A Detail


Release date
2015-04-12
Citation 1
Solution structure of TbPar42
Rehic, E., Hoenig, D., Rueppel, A., Matena, A., Bayer, P.
Not known
Citation 2
Functional characterization of two novel parvulins in Trypanosoma brucei
Goh, J.Y., Lai, C., Tan, L.C., Yang, D., He, C.Y., Liou, Y.
FEBS Lett. (2010), 584, 2901-2908, PubMed 20466001 , DOI 10.1016/j.febslet.2010.04.077 ,
Citation 3
Identification of an atypical peptidyl-prolyl cis/trans isomerase from trypanosomatids
Erben, E.D., Valguarnera, E., Nardelli, S., Chung, J., Daum, S., Potenza, M., Schenkman, S., Tellez-Inon, M.T.
Biochim. Biophys. Acta (2010), 1803, 1028-1037, PubMed 20580912 , DOI 10.1016/j.bbamcr.2010.05.006 ,
Related entities 1. PPIase domain of TbPar42, : 1 : 2 : 123 entities Detail
Experiments performed 18 experiments Detail
NMR combined restraints 5 contents Detail
Keywords NMR, PPIase domain, TbPar42, TbPar45, Trypanosoma