BMRBj - BMREntryMaster

	Total	¹H	¹³C	¹⁵N
All	78.2 % (1133 of 1449)	82.9 % (630 of 760)	69.9 % (395 of 565)	87.1 % (108 of 124)
Backbone	76.0 % (549 of 722)	86.7 % (216 of 249)	64.3 % (229 of 356)	88.9 % (104 of 117)
Sidechain	82.4 % (691 of 839)	81.0 % (414 of 511)	85.0 % (273 of 321)	57.1 % (4 of 7)
Aromatic	84.9 % (107 of 126)	90.5 % (57 of 63)	78.3 % (47 of 60)	100.0 % (3 of 3)
Methyl	94.9 % (112 of 118)	94.9 % (56 of 59)	94.9 % (56 of 59)

1. entity

GAREGPKWDP ARLNESTTFV LGSRANKALG MGGTRGRIYI KHPHLFKYAA DPQDKHWLAE QHHMRATGGK MAYLLIEEDI RDLAASDDYR GCLDLKLEEL KSFVLPSWMV EKMRKYMETL RT

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
7	potassium phosphate	natural abundance	40 mM
8	DTT	natural abundance	1 mM
9	sodium azide	natural abundance	1 mM
10	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
11	D2O	natural abundance	100 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.12 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.12 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.07 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 65 models in PDB: 2MWI, Strand ID: A Detail

Release date

2015-08-24

Citation

Structural and functional characterization of a cell cycle associated HDAC1/2 complex reveals the structural basis for complex assembly and nucleosome targeting
Itoh, T., Fairall, L., Muskett, F.W., Milano, C.P., Watson, P.J., Arnaudo, N., Martino, F., Schwabe, J.W.R.
Nucleic Acids Res. (2015), 43, 2033-2044, PubMed 25653165 , DOI 10.1093/nar/gkv068 , Abstract

Related entities 1. carboxy-terminal domain of DNTTIP1, : 1 : 8 : 4 entities Detail

Interaction partners 1. carboxy-terminal domain of DNTTIP1, : 21 interactors Detail

More details for 21 interactors identified by 10 citations

Experiments performed 13 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

2 3D CBCA(CO)NH

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

3 3D HNCACB

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

4 3D HN(CO)CA

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

5 3D HNHA

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

6 3D HBHA(CO)NH

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

7 3D HNCA

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

8 3D HNCO

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

9 3D HCCH-TOCSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
7	potassium phosphate	natural abundance	40 mM
8	DTT	natural abundance	1 mM
9	sodium azide	natural abundance	1 mM
10	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
11	D2O	natural abundance	100 %

10 3D CCH-TOCSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
7	potassium phosphate	natural abundance	40 mM
8	DTT	natural abundance	1 mM
9	sodium azide	natural abundance	1 mM
10	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
11	D2O	natural abundance	100 %

11 2D 1H-13C HSQC

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
7	potassium phosphate	natural abundance	40 mM
8	DTT	natural abundance	1 mM
9	sodium azide	natural abundance	1 mM
10	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
11	D2O	natural abundance	100 %

12 3D 1H-15N NOESY

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	potassium phosphate	natural abundance	40 mM
2	DTT	natural abundance	1 mM
3	sodium azide	natural abundance	1 mM
4	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
5	H2O	natural abundance	90 %
6	D2O	natural abundance	10 %

13 3D 1H-13C NOESY aliphatic

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0

#	Name	Isotope labeling	Concentration
7	potassium phosphate	natural abundance	40 mM
8	DTT	natural abundance	1 mM
9	sodium azide	natural abundance	1 mM
10	DNTTIP1(197-316)	[U-100% 13C; U-100% 15N]	0.3 mM
11	D2O	natural abundance	100 %

NMR combined restraints 3 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Dihedral angle restraints	combined_25326_2mwi.nef
Input source #2: Coordindates	2mwi.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

---200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
GAREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEEL
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GAREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEEL
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

---300-------310------
KSFVLPSWMVEKMRKYMETLRT
||||||||||||||||||||||
KSFVLPSWMVEKMRKYMETLRT
-------110-------120--

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	122	0	0	100.0

Content subtype: combined_25326_2mwi.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chem_shift_list_1	Warning	1108		91.8 (chain: A, length: 122)
1	Dihedral angle restraints	DYANA/DIANA_dihedral_3	OK	166 (166)	.	88.5 (chain: A, length: 122)

Assigned chemical shifts

Saveframe: assigned_chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 122, Sequence coverage: 91.8%
- Total number of assignments
  - ¹H chemical shifts: 618
  - ¹³C chemical shifts: 382
  - ¹⁵N chemical shifts: 108
- Completeness of assignments
  - Entity_assemble_ID: A
- Redox state of CYS
- Peptide bond of PRO
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	760	618	81.3
¹³C chemical shifts	565	382	67.6
¹⁵N chemical shifts	134	108	80.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	249	213	85.5
¹³C chemical shifts	244	112	45.9
¹⁵N chemical shifts	117	101	86.3

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	511	405	79.3
¹³C chemical shifts	321	270	84.1
¹⁵N chemical shifts	17	7	41.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	65	58	89.2
¹³C chemical shifts	65	58	89.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	63	57	90.5
¹³C chemical shifts	60	47	78.3
¹⁵N chemical shifts	3	3	100.0

Dihedral angle restraints

Saveframe: DYANA/DIANA_dihedral_3
- Status: OK
- Experiment type: .
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 122, Sequence coverage: 88.5%
- Total number of restraints: 166
- Total number of restraints per polymer type: 166
- Weight of restraints: 1.0 (166)
- Potential type of restraints: square-well-parabolic (166)
- Plot of Phi-Psi angle restraints
- Dihedral angle restraints per residue
  - Chain_ID: A

Keywords DNTTIP1, HDAC, HDAC1, MIDEAS, TDIF1, gene expression, histone deacetylase

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Found 1 Document (2.139 seconds)

BMRB: 25326

Sample #1

Sample #2

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. carboxy-terminal domain of DNTTIP1, : 1 : 8 : 4 entities Detail

Interaction partners 1. carboxy-terminal domain of DNTTIP1, : 21 interactors Detail

Experiments performed 13 experiments Detail

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NMR combined restraints 3 contents Detail