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Backbone and 1H assignments for VG16KRKP, an antimicrobial peptide in LPS
Authors
Bhunia, A., Datta, A.
Assembly
VG16KRKP, an antimicrobial peptide in LPS
Entity
1. VG16KRKP, an antimicrobial peptide in LPS (polymer), 17 monomers, 1817.168 Da Detail

VARGWKRKCP LFGKGGG


Formula weight
1817.168 Da
Exptl. method
solution NMR
Refine. method
DGSA-distance geometry simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 83.3 %, Completeness (bb): 84.2 % Detail

Polymer type: polypeptide(L)

Total1H
All83.3 % (90 of 108)83.3 % (90 of 108)
Backbone84.2 % (32 of 38)84.2 % (32 of 38)
Sidechain82.9 % (58 of 70)82.9 % (58 of 70)
Aromatic63.6 % (7 of 11)63.6 % (7 of 11)
Methyl100.0 % (5 of 5)100.0 % (5 of 5)

1. entity

VARGWKRKCP LFGKGGG

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 4.5


#NameIsotope labelingTypeConcentration
1H2Onatural abundance90 %
2D2Onatural abundance10 %
3TSPnatural abundance1 mM
4entitynatural abundance1 mM

Protein Blocks Logo
Calculated from 20 models in PDB: 2MWL, Strand ID: A Detail


Release date
2014-12-21
Citation
denovo design of antimicrobial peptide:insights into outer membrane permeabilisation, LPs fragmentation and application in treating plant disease
Bhunia, A., Datta, A.
Not known
Related entities 1. VG16KRKP, an antimicrobial peptide in LPS, : 1 : 9 : 107 entities Detail
Experiments performed 2 experiments Detail
NMR combined restraints 4 contents Detail
Keywords antimicrobial peptide, turn type