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Acidocin B
Authors
Vederas, J.C., Acedo, J.Z., van Belkum, M.J., Lohans, C.T.
Assembly
Acidocin B
Entity
1. Acidocin B (polymer, Thiol state: not present), 58 monomers, 5639.460 Da Detail

IYWIADQFGI HLATGTARKL LDAVASGASL GTAFAAILGV TLPAWALAAA GALGATAA


Formula weight
5639.46 Da
Entity Connection
peptide 1 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1peptidesing1:ILE1:N1:ALA58:C

Source organism
Lactobacillus acidophilus
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 98.3 %, Completeness: 94.8 %, Completeness (bb): 95.1 % Detail

Polymer type: polypeptide(L)

Total1H
All94.8 % (276 of 291)94.8 % (276 of 291)
Backbone95.1 % (116 of 122)95.1 % (116 of 122)
Sidechain94.7 % (160 of 169)94.7 % (160 of 169)
Aromatic92.9 % (26 of 28)92.9 % (26 of 28)
Methyl96.1 % (49 of 51)96.1 % (49 of 51)

1. entity

IYWIADQFGI HLATGTARKL LDAVASGASL GTAFAAILGV TLPAWALAAA GALGATAA

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 273 K, pH 6


#NameIsotope labelingTypeConcentration
1entitynatural abundance1 mM
2SDS[U-99% 2H]80 mM
3DSSnatural abundance0.5 mM
4D2Onatural abundance10 %
5H2Onatural abundance90 %

Protein Blocks Logo
Calculated from 20 models in PDB: 2MWR, Strand ID: A Detail


Release date
2015-08-18
Citation
Solution structure of acidocin B, a circular bacteriocin produced by Lactobacillus acidophilus M46
Acedo, J.Z., van Belkum, M.J., Lohans, C.T., McKay, R.T., Miskolzie, M., Vederas, J.C.
Appl. Environ. Microbiol. (2015), 81, 2910-2918, PubMed 25681186 , DOI 10.1128/AEM.04265-14 ,
Related entities 1. Acidocin B, : 1 : 2 entities Detail
Experiments performed 2 experiments Detail
NMR combined restraints 3 contents Detail
Keywords circular bacteriocin, class ii, cyclic, helical