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Snu17p-Pml1p structure intermediate during RES complex assembly
Authors
Wysoczanski, P., Becker, S., Zweckstetter, M.
Assembly
Heterodimeric complex composed of Snu17p/Ist3p(25-138) and Pml1p(22-42)
Entity
1. Snu17p (polymer, Thiol state: not present), 118 monomers, 13478.84 Da Detail

GAMGNEYKDN AYIYIGNLNR ELTEGDILTV FSEYGVPVDV ILSRDENTGE SQGFAYLKYE DQRSTILAVD NLNGFKIGGR ALKIDHTFYR PKRSLQKYYE AVKEELDRDI VSKNNAEK


2. Pml1p (polymer, Thiol state: not present), 23 monomers, 2513.772 Da Detail

GSKSQYIDIM PDFSPSGLLE LES


Total weight
15992.611 Da
Max. entity weight
13478.84 Da
Source organism
Saccharomyces cerevisiae S288C
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 97.9 %, Completeness: 90.9 %, Completeness (bb): 91.5 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All90.9 % (1500 of 1650)90.7 % (781 of 861)91.1 % (582 of 639)91.3 % (137 of 150)
Backbone91.5 % (767 of 838)92.1 % (267 of 290)90.3 % (371 of 411)94.2 % (129 of 137)
Sidechain91.0 % (856 of 941)90.0 % (514 of 571)93.6 % (334 of 357)61.5 % (8 of 13)
Aromatic94.0 % (126 of 134)94.0 % (63 of 67)94.0 % (63 of 67)
Methyl96.5 % (139 of 144)95.8 % (69 of 72)97.2 % (70 of 72)

1. Snu17p

GAMGNEYKDN AYIYIGNLNR ELTEGDILTV FSEYGVPVDV ILSRDENTGE SQGFAYLKYE DQRSTILAVD NLNGFKIGGR ALKIDHTFYR PKRSLQKYYE AVKEELDRDI VSKNNAEK

2. Pml1p

GSKSQYIDIM PDFSPSGLLE LES

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 308 K, pH 6.8, Details 160-180 uL, 3 mm tube


#NameIsotope labelingTypeConcentration
1sodium phosphatenatural abundance25 mM
2sodium chloridenatural abundance250 mM
3Snu17p[U-13C; U-15N]0.8 ~ 1.0 mM
4Pml1p_Fmocnatural abundance1.2 ~ 1.5 mM
5sodium azidenatural abundance1 mM
6D2Onatural abundance10 %
7H2Onatural abundance90 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 308 K, pH 6.8, Details 160-180 uL, 3 mm tube


#NameIsotope labelingTypeConcentration
8sodium phosphatenatural abundance25 mM
9sodium chloridenatural abundance250 mM
10Snu17pnatural abundance1.0 ~ 1.2 mM
11Pml1p[U-13C; U-15N]0.8 ~ 1.0 mM
12sodium azidenatural abundance1 mM
13D2Onatural abundance10 %
14H2Onatural abundance90 %

Protein Blocks Logo
Calculated from 20 models in PDB: 2MY3, Strand ID: A, B Detail


Release date
2015-08-09
Citation
Structures of intermediates during RES complex assembly
Wysoczanski, P., Becker, S., Zweckstetter, M.
Sci. Rep. (2015), 5, 12545-12545, PubMed 26212312 , DOI 10.1038/srep12545 ,
Related entities 1. Snu17p, : 15 entities Detail
Related entities 2. Pml1p, : 1 : 1 : 5 : 1 entities Detail
Interaction partners 2. Pml1p, : 9 interactors Detail
Experiments performed 21 experiments Detail
NMR combined restraints 5 contents Detail
Keywords Ist3p, Pml1p, RES, RRM, Snu17p, cooperativity, heterodimer, spliceosome, splicing