BMRB: 25509

1H, 13C, 15N chemical shift assignments for APOBEC3G NTD variant, sNTD

Authors

Kouno, T., Luengas, E.M., Shigematu, M., Shandilya, S.M.D., Zhang, J., Chen, L., Hara, M., Schiffer, C.A., Harris, R.S., Matsuo, H.

Assembly

APOBEC3G NTD variant, sNTD

Entity

1. sNTD (polymer, Thiol state: all free), 180 monomers, 21288.80 Da Detail

MDPDTFSYNF NNRPILSRRN TVWLCYEVKT KGPSRPPLDA KIFRGQVYSE DKYHPEMRFL SLVSKWKLHR DQEYEVTWYI SWSPCTKCAR DMATFLQENT HVTLTIFVAR LYYAWDPDYQ EALRSLAQAG ATIKIMNYDE FQHCWSKFVY SQGAPFQPWD GLDEHSQALS GRLGEILRHS

2. ZINC ION (non-polymer), 65.409 Da

Total weight

21354.209 Da

Max. entity weight

21288.8 Da

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 92.8 %, Completeness: 44.6 %, Completeness (bb): 75.8 % Detail

Download

• NMR-STAR v3.1 (partial)
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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	44.6 % (978 of 2194)	37.4 % (428 of 1143)	46.2 % (397 of 859)	79.7 % (153 of 192)
Backbone	75.8 % (803 of 1060)	84.6 % (302 of 357)	65.9 % (351 of 533)	88.2 % (150 of 170)
Sidechain	15.4 % (201 of 1307)	16.2 % (127 of 786)	14.2 % (71 of 499)	13.6 % (3 of 22)
Aromatic	11.2 % (32 of 286)	11.9 % (17 of 143)	11.0 % (15 of 136)	0.0 % (0 of 7)
Methyl	11.1 % (18 of 162)	11.1 % (9 of 81)	11.1 % (9 of 81)

1. sNTD

MDPDTFSYNF NNRPILSRRN TVWLCYEVKT KGPSRPPLDA KIFRGQVYSE DKYHPEMRFL SLVSKWKLHR DQEYEVTWYI SWSPCTKCAR DMATFLQENT HVTLTIFVAR LYYAWDPDYQ EALRSLAQAG ATIKIMNYDE FQHCWSKFVY SQGAPFQPWD GLDEHSQALS GRLGEILRHS

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
1	entity	[U-100% 15N; U-85% 2H]		0.15-0.20 mM
2	sodium phosphate	natural abundance		10 mM
3	sodium chloride	natural abundance		100 mM
4	Tween 20	natural abundance		0.005 %
5	TCEP	natural abundance		0.5 mM
6	sodium azide	natural abundance		0.01 %
7	Choline o-sulfate	[U-98% 2H]		0.5 M
8	H2O	natural abundance		95 %
9	D2O	natural abundance		5 %

Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
10	entity	[U-100% 13C; U-100% 15N; U-85% 2H]		0.15-0.20 mM
11	sodium phosphate	natural abundance		10 mM
12	sodium chloride	natural abundance		100 mM
13	Tween 20	natural abundance		0.005 %
14	TCEP	natural abundance		0.5 mM
15	sodium azide	natural abundance		0.01 %
16	Choline o-sulfate	[U-98% 2H]		0.5 M
17	H2O	natural abundance		95 %
18	D2O	natural abundance		5 %

Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
19	entity	[U-100% 13C; U-100% 15N; U-60% 2H]		0.05-0.10 mM
20	sodium phosphate	natural abundance		10 mM
21	sodium chloride	natural abundance		100 mM
22	Tween 20	natural abundance		0.005 %
23	TCEP	natural abundance		0.5 mM
24	sodium azide	natural abundance		0.01 %
25	Choline o-sulfate	[U-98% 2H]		0.5 M
26	H2O	natural abundance		95 %
27	D2O	natural abundance		5 %

Sample #4

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
28	entity	[U-80% 2H; 100% 15N-Arg]		0.05-0.10 mM
29	sodium phosphate	natural abundance		10 mM
30	sodium chloride	natural abundance		100 mM
31	Tween 20	natural abundance		0.005 %
32	TCEP	natural abundance		0.5 mM
33	sodium azide	natural abundance		0.01 %
34	Choline o-sulfate	[U-98% 2H]		0.5 M
35	H2O	natural abundance		95 %
36	D2O	natural abundance		5 %

Sample #5

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
37	entity	[U-80% 2H; 100% 15N-Ile]		0.05-0.10 mM
38	sodium phosphate	natural abundance		10 mM
39	sodium chloride	natural abundance		100 mM
40	Tween 20	natural abundance		0.005 %
41	TCEP	natural abundance		0.5 mM
42	sodium azide	natural abundance		0.01 %
43	Choline o-sulfate	[U-98% 2H]		0.5 M
44	H2O	natural abundance		95 %
45	D2O	natural abundance		5 %

Sample #6

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
46	entity	[U-80% 2H; 100% 15N-Leu]		0.05-0.10 mM
47	sodium phosphate	natural abundance		10 mM
48	sodium chloride	natural abundance		100 mM
49	Tween 20	natural abundance		0.005 %
50	TCEP	natural abundance		0.5 mM
51	sodium azide	natural abundance		0.01 %
52	Choline o-sulfate	[U-98% 2H]		0.5 M
53	H2O	natural abundance		95 %
54	D2O	natural abundance		5 %

Sample #7

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
55	entity	[U-80% 2H; 100% 15N-Lys]		0.05-0.10 mM
56	sodium phosphate	natural abundance		10 mM
57	sodium chloride	natural abundance		100 mM
58	Tween 20	natural abundance		0.005 %
59	TCEP	natural abundance		0.5 mM
60	sodium azide	natural abundance		0.01 %
61	Choline o-sulfate	[U-98% 2H]		0.5 M
62	H2O	natural abundance		95 %
63	D2O	natural abundance		5 %

Sample #8

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
64	entity	[U-80% 2H; 100% 15N-Phe]		0.05-0.10 mM
65	sodium phosphate	natural abundance		10 mM
66	sodium chloride	natural abundance		100 mM
67	Tween 20	natural abundance		0.005 %
68	TCEP	natural abundance		0.5 mM
69	sodium azide	natural abundance		0.01 %
70	Choline o-sulfate	[U-98% 2H]		0.5 M
71	H2O	natural abundance		95 %
72	D2O	natural abundance		5 %

Sample #9

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
73	entity	[U-80% 2H; 100% 15N-Tyr]		0.05-0.10 mM
74	sodium phosphate	natural abundance		10 mM
75	sodium chloride	natural abundance		100 mM
76	Tween 20	natural abundance		0.005 %
77	TCEP	natural abundance		0.5 mM
78	sodium azide	natural abundance		0.01 %
79	Choline o-sulfate	[U-98% 2H]		0.5 M
80	H2O	natural abundance		95 %
81	D2O	natural abundance		5 %

Sample #10

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
82	entity	[U-80% 2H; 100% 1H, 100% 13C-Ala]		0.05-0.10 mM
83	sodium phosphate	natural abundance		10 mM
84	sodium chloride	natural abundance		100 mM
85	Tween 20	natural abundance		0.005 %
86	TCEP	natural abundance		0.5 mM
87	sodium azide	natural abundance		0.01 %
88	Choline o-sulfate	[U-98% 2H]		0.5 M
89	H2O	natural abundance		95 %
90	D2O	natural abundance		5 %

Sample #11

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
91	entity	[U-80% 2H; 100% 1H, 100% 13C-Arg]		0.05-0.10 mM
92	sodium phosphate	natural abundance		10 mM
93	sodium chloride	natural abundance		100 mM
94	Tween 20	natural abundance		0.005 %
95	TCEP	natural abundance		0.5 mM
96	sodium azide	natural abundance		0.01 %
97	Choline o-sulfate	[U-98% 2H]		0.5 M
98	D2O	natural abundance		100 %

Sample #12

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
99	entity	[U-80% 2H; 100% 1H, 100% 13C-Ile]		0.05-0.10 mM
100	sodium phosphate	natural abundance		10 mM
101	sodium chloride	natural abundance		100 mM
102	Tween 20	natural abundance		0.005 %
103	TCEP	natural abundance		0.5 mM
104	sodium azide	natural abundance		0.01 %
105	Choline o-sulfate	[U-98% 2H]		0.5 M
106	D2O	natural abundance		100 %

Sample #13

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
107	entity	[U-80% 2H; 100% 1H, 100% 13C-Leu]		0.05-0.10 mM
108	sodium phosphate	natural abundance		10 mM
109	sodium chloride	natural abundance		100 mM
110	Tween 20	natural abundance		0.005 %
111	TCEP	natural abundance		0.5 mM
112	sodium azide	natural abundance		0.01 %
113	Choline o-sulfate	[U-98% 2H]		0.5 M
114	D2O	natural abundance		100 %

Sample #14

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
115	entity	[U-80% 2H; 100% 1H, 100% 13C-Lys]		0.05-0.10 mM
116	sodium phosphate	natural abundance		10 mM
117	sodium chloride	natural abundance		100 mM
118	Tween 20	natural abundance		0.005 %
119	TCEP	natural abundance		0.5 mM
120	sodium azide	natural abundance		0.01 %
121	Choline o-sulfate	[U-98% 2H]		0.5 M
122	D2O	natural abundance		100 %

Sample #15

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
123	entity	[U-80% 2H; 100% 1H, 100% 13C-Met]		0.05-0.10 mM
124	sodium phosphate	natural abundance		10 mM
125	sodium chloride	natural abundance		100 mM
126	Tween 20	natural abundance		0.005 %
127	TCEP	natural abundance		0.5 mM
128	sodium azide	natural abundance		0.01 %
129	Choline o-sulfate	[U-98% 2H]		0.5 M
130	D2O	natural abundance		100 %

Sample #16

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
131	entity	[U-80% 2H; 100% 1H, 100% 13C-Phe]		0.05-0.10 mM
132	sodium phosphate	natural abundance		10 mM
133	sodium chloride	natural abundance		100 mM
134	Tween 20	natural abundance		0.005 %
135	TCEP	natural abundance		0.5 mM
136	sodium azide	natural abundance		0.01 %
137	Choline o-sulfate	[U-98% 2H]		0.5 M
138	D2O	natural abundance		100 %

Sample #17

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
139	entity	[U-80% 2H; 100% 1H, 100% 13C-Thr]		0.05-0.10 mM
140	sodium phosphate	natural abundance		10 mM
141	sodium chloride	natural abundance		100 mM
142	Tween 20	natural abundance		0.005 %
143	TCEP	natural abundance		0.5 mM
144	sodium azide	natural abundance		0.01 %
145	Choline o-sulfate	[U-98% 2H]		0.5 M
146	D2O	natural abundance		100 %

Sample #18

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
147	entity	[U-80% 2H; 100% 1H, 100% 13C-Tyr]		0.05-0.10 mM
148	sodium phosphate	natural abundance		10 mM
149	sodium chloride	natural abundance		100 mM
150	Tween 20	natural abundance		0.005 %
151	TCEP	natural abundance		0.5 mM
152	sodium azide	natural abundance		0.01 %
153	Choline o-sulfate	[U-98% 2H]		0.5 M
154	D2O	natural abundance		100 %

Sample #19

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
155	entity	[U-80% 2H; 100% 1H, 100% 13C-Val]		0.05-0.10 mM
156	sodium phosphate	natural abundance		10 mM
157	sodium chloride	natural abundance		100 mM
158	Tween 20	natural abundance		0.005 %
159	TCEP	natural abundance		0.5 mM
160	sodium azide	natural abundance		0.01 %
161	Choline o-sulfate	[U-98% 2H]		0.5 M
162	D2O	natural abundance		100 %

Sample #20

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
163	entity	[U-80% 2H; 100% 1H-Phe,Tyr,Ile]		0.05-0.10 mM
164	sodium phosphate	natural abundance		10 mM
165	sodium chloride	natural abundance		100 mM
166	Tween 20	natural abundance		0.005 %
167	TCEP	natural abundance		0.5 mM
168	sodium azide	natural abundance		0.01 %
169	Choline o-sulfate	[U-98% 2H]		0.5 M
170	D2O	natural abundance		100 %

Sample #21

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
171	entity	[U-80% 2H; 100% 1H-Phe,Tyr,Leu]		0.05-0.10 mM
172	sodium phosphate	natural abundance		10 mM
173	sodium chloride	natural abundance		100 mM
174	Tween 20	natural abundance		0.005 %
175	TCEP	natural abundance		0.5 mM
176	sodium azide	natural abundance		0.01 %
177	Choline o-sulfate	[U-98% 2H]		0.5 M
178	D2O	natural abundance		100 %

Sample #22

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
179	entity	[U-80% 2H; 100% 1H-Phe,Tyr,Val]		0.05-0.10 mM
180	sodium phosphate	natural abundance		10 mM
181	sodium chloride	natural abundance		100 mM
182	Tween 20	natural abundance		0.005 %
183	TCEP	natural abundance		0.5 mM
184	sodium azide	natural abundance		0.01 %
185	Choline o-sulfate	[U-98% 2H]		0.5 M
186	D2O	natural abundance		100 %

Sample #23

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
187	entity	[U-80% 2H; 100% 1H-Trp,Ile,Leu,Val]		0.05-0.10 mM
188	sodium phosphate	natural abundance		10 mM
189	sodium chloride	natural abundance		100 mM
190	Tween 20	natural abundance		0.005 %
191	TCEP	natural abundance		0.5 mM
192	sodium azide	natural abundance		0.01 %
193	Choline o-sulfate	[U-98% 2H]		0.5 M
194	D2O	natural abundance		100 %

Sample #24

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.3

#	Name	Isotope labeling	Type	Concentration
195	entity	natural abundance		0.15-0.20 mM
196	sodium phosphate	natural abundance		10 mM
197	sodium chloride	natural abundance		100 mM
198	Tween 20	natural abundance		0.005 %
199	TCEP	natural abundance		0.5 mM
200	sodium azide	natural abundance		0.01 %
201	Choline o-sulfate	[U-98% 2H]		0.5 M
202	D2O	natural abundance		100 %

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Calculated from 10 models in PDB: 2MZZ, Strand ID: A Detail

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Release date

2015-05-04

Citation

Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G
Kono, T., Luengas, E.M., Shigematu, M., Shandilya, S., Zhang, J., Chen, L., Hara, M., Schiffer, C.A., Harris, R.S., Matsuo, H.
Nat. Struct. Mol. Biol. (2015), 22, 485-491, PubMed 25984970 , DOI 10.1038/nsmb.3033 , Abstract

Related entities 1. sNTD, : 1 : 248 entities Detail

Interaction partners 1. sNTD, : 10 interactors Detail

Experiments performed 40 experiments Detail

NMR combined restraints 5 contents Detail