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Structure of the Third Type III Domain from Human Fibronectin
Authors
Stine, J.M., Sun, Y., Armstrong, G., Briknarova, K.
Assembly
Third Type III Domain from Human Fibronectin
Entity
1. Third Type III Domain from Human Fibronectin (polymer, Thiol state: not present), 106 monomers, 11332.16 Da Detail

GSHMGTTTAP DAPPDPTVDQ VDDTSIVVRW SRPQAPITGY RIVYSPSVEG SSTELNLPET ANSVTLSDLQ PGVQYNITIY AVEENQESTP VVIQQETTGT PRSDGT


Formula weight
11332.16 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 98.1 %, Completeness: 95.9 %, Completeness (bb): 94.1 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All95.9 % (1090 of 1137)96.2 % (561 of 583)96.4 % (431 of 447)91.6 % (98 of 107)
Backbone94.1 % (578 of 614)93.8 % (195 of 208)95.5 % (297 of 311)90.5 % (86 of 95)
Sidechain97.9 % (609 of 622)97.6 % (366 of 375)98.3 % (231 of 235)100.0 % (12 of 12)
Aromatic100.0 % (48 of 48)100.0 % (24 of 24)100.0 % (23 of 23)100.0 % (1 of 1)
Methyl98.4 % (122 of 124)98.4 % (61 of 62)98.4 % (61 of 62)

1. entity

GSHMGTTTAP DAPPDPTVDQ VDDTSIVVRW SRPQAPITGY RIVYSPSVEG SSTELNLPET ANSVTLSDLQ PGVQYNITIY AVEENQESTP VVIQQETTGT PRSDGT

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298.15 K, pH 7.5


#NameIsotope labelingTypeConcentration
1entity[U-99% 13C; U-99% 15N]0.6 mM
2sodium phosphatenatural abundance10 mM
3potassium phosphatenatural abundance1.8 mM
4sodium chloridenatural abundance140 mM
5potassium chloridenatural abundance2.7 mM
6H2Onatural abundance90 %
7D2Onatural abundance10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298.15 K, pH 7.5


#NameIsotope labelingTypeConcentration
8entity[U-99% 15N]0.6 mM
9sodium phosphatenatural abundance10 mM
10potassium phosphatenatural abundance1.8 mM
11sodium chloridenatural abundance140 mM
12potassium chloridenatural abundance2.7 mM
13H2Onatural abundance90 %
14D2Onatural abundance10 %
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298.15 K, pH 7.5


#NameIsotope labelingTypeConcentration
15entitynatural abundance0.6 mM
16sodium phosphatenatural abundance10 mM
17potassium phosphatenatural abundance1.8 mM
18sodium chloridenatural abundance140 mM
19potassium chloridenatural abundance2.7 mM
20H2Onatural abundance90 %
21D2Onatural abundance10 %
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 298.15 K, pH 7.5


#NameIsotope labelingTypeConcentration
22entitynatural abundance0.6 mM
23sodium phosphatenatural abundance10 mM
24potassium phosphatenatural abundance1.8 mM
25sodium chloridenatural abundance140 mM
26potassium chloridenatural abundance2.7 mM
27D2Onatural abundance100 %
Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298.15 K, pH 7.5


#NameIsotope labelingTypeConcentration
28entity[U-99% 13C; U-99% 15N]0.9 mM
29sodium phosphatenatural abundance10 mM
30potassium phosphatenatural abundance1.8 mM
31sodium chloridenatural abundance140 mM
32potassium chloridenatural abundance2.7 mM
33entitynatural abundance0.9 mM
34H2Onatural abundance90 %
35D2Onatural abundance10 %

LACS Plot; CA
Referencing offset: -0.33 ppm, Outliers: 1 Detail
LACS Plot; CB
Referencing offset: -0.33 ppm, Outliers: 1 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.97 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 25 models in PDB: 2N1K, Strand ID: A Detail


Release date
2015-11-08
Citation
Structure and Unfolding of the Third Type III Domain from Human Fibronectin
Stine, J.M., Sun, Y., Armstrong, G., Briknarova, K.
Biochemistry (2015), 54, 6724-6733, PubMed 26517579 , DOI 10.1021/acs.biochem.5b00818 ,
Related entities 1. Third Type III Domain from Human Fibronectin, : 1 : 6 : 356 entities Detail
Interaction partners 1. Third Type III Domain from Human Fibronectin, : 15 interactors Detail
Experiments performed 23 experiments Detail
NMR combined restraints 6 contents Detail
Keywords FN3 domain, fibronectin