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BMRB: 25567

2N1M

NMR structure of the apo-form of the flavoprotein YP_193882.1 from Lactobacillus acidophilus NCFM

Authors

Dutta, S.K., Serrano, P., Geralt, M., Wuthrich, K.

Assembly

YP 193882.1

Entity

1. YP 193882.1 (polymer, Thiol state: all free), 151 monomers, 17059.88 Da Detail

GMAKKTLILY YSWSGETKKM AEKINSEIKD SELKEVKVSE GTFDADMYKT SDIALDQIQG NKDFPEIQLD NIDYNNYDLI LIGSPVWSGY PATPIKTLLD QMKNYRGEVA SFFTSAGTNH KAYVSHFNEW ADGLNVIGVA RDDSEVDKWS K

Formula weight

17059.88 Da

Source organism

Lactobacillus acidophilus NCFM

Exptl. method

solution NMR

Refine. method

molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 94.0 %, Completeness: 84.1 %, Completeness (bb): 86.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	84.1 % (1491 of 1772)	85.3 % (783 of 918)	81.6 % (563 of 690)	88.4 % (145 of 164)
Backbone	86.2 % (774 of 898)	87.3 % (269 of 308)	84.7 % (375 of 443)	88.4 % (130 of 147)
Sidechain	83.4 % (847 of 1015)	84.3 % (514 of 610)	82.0 % (318 of 388)	88.2 % (15 of 17)
Aromatic	63.5 % (108 of 170)	77.6 % (66 of 85)	48.1 % (39 of 81)	75.0 % (3 of 4)
Methyl	95.4 % (145 of 152)	94.7 % (72 of 76)	96.1 % (73 of 76)

1. entity

GMAKKTLILY YSWSGETKKM AEKINSEIKD SELKEVKVSE GTFDADMYKT SDIALDQIQG NKDFPEIQLD NIDYNNYDLI LIGSPVWSGY PATPIKTLLD QMKNYRGEVA SFFTSAGTNH KAYVSHFNEW ADGLNVIGVA RDDSEVDKWS K

Show sample condition

Sample

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 308 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	entity	[U-99% 13C; U-98% 15N]	1.2 mM
2	sodium phosphate	natural abundance	20 mM
3	sodium chloride	natural abundance	50 mM
4	sodium azide	natural abundance	5 mM
5	H2O	natural abundance	95 %
6	D2O	natural abundance	5 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 2.64 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 2.64 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.07 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 2.9 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 2N1M, Strand ID: A Detail

Release date

2015-04-19

Citation

NMR structure of the apo-form of the flavoprotein YP_193882.1 from Lactobacillus acidophilus NCFM
Dutta, S.K., Serrano, P., Geralt, M., Wuthrich, K.
Not known

Related entities 1. YP 193882.1, : 1 : 1 : 1 : 43 entities Detail

Experiments performed 6 experiments Detail

1 2D 1H-15N HSQC