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Two-fold symmetric structure of the 18-60 construct of S31N M2 from Influenza A in lipid bilayers
Authors
Andreas, L.B., Reese, M., Eddy, M.T., Gelev, V., Ni, Q., Miller, E.A., Emsley, L., Pintacuda, G., Chou, J.J., Griffin, R.G.
Assembly
Influenza-A M2
Entity
1. Influenza-A M2 (polymer, Thiol state: not present), 43 monomers, 5028.851 × 4 Da Detail

RSNDSSDPLV VAANIIGILH LILWILDRLF FKSIYRFFEH GLK


Total weight
20115.404 Da
Max. entity weight
5028.851 Da
Source organism
Influenza A virus (A/udorn/1972(H3N2))
Exptl. method
NMR
Refine. method
DGSA-distance geometry simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 72.1 %, Completeness: 43.4 %, Completeness (bb): 58.2 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All43.4 % (235 of 542)19.7 % (55 of 279)67.9 % (148 of 218)71.1 % (32 of 45)
Backbone58.2 % (149 of 256)34.5 % (30 of 87)70.1 % (89 of 127)71.4 % (30 of 42)
Sidechain35.2 % (115 of 327)13.0 % (25 of 192)66.7 % (88 of 132)66.7 % (2 of 3)
Aromatic19.1 % (13 of 68) 2.9 % (1 of 34)33.3 % (11 of 33)100.0 % (1 of 1)
Methyl56.3 % (36 of 64)18.8 % (6 of 32)93.8 % (30 of 32)

1. matrix protein 2

RSNDSSDPLV VAANIIGILH LILWILDRLF FKSIYRFFEH GLK

Sample #1

Solvent system H2O, Temperature 298 (±5) K, pH 7.8, Details Per liter, 3 g 13C glucose and 1 g 15N ammonium chloride (CIL), with another 0.5 to 1 g 13C glucose added at induction (150 M IPTG, 18 C) at an OD600 of 0.7 to 0.9. The final OD600 reached 3.5 to 4, after 18 hours of expression at 18 C, 15mg of pure protein.


#NameIsotope labelingTypeConcentration
1sodium phosphatenatural abundancebuffer40 (±1.0) mM
2glutamic acidnatural abundance30 (±1.0) mM
3sodium azidenatural abundance3 (±1.0) mM
41,2-diphytanoyl-sn-glycero-3-phosphocholinenatural abundance50 % w/w
5matrix protein 2[U-13C,15N]protein50 % w/w
6H2Onatural abundancesolvent100 %
Sample #2

Solvent system H2O, Temperature 298 (±5) K, pH 7.8, Details Per liter, 3 g 13C glucose and 1 g 15N ammonium chloride (CIL), with another 0.5 to 1 g 13C glucose added at induction. Cells were grown in 700 mL of media, with 300 mL of media used to dissolve the amino acids. When the OD600 reached 0.7, the reserved 300 mL of media was added, along with amino acids at natural isotopic abundance:23,24 150 mg isoleucine, 150 mg leucine, 50 mg phenylalanine, and 100 mg tyrosine (Sigma-Aldrich). Expression of protein was induced with 150 M IPTG at 18 C as before. The final OD600 reached 3.5 to 4.6, after 18 hours of expression at 18 C, and yielded up to 15 mg of pure protein.


#NameIsotope labelingTypeConcentration
7sodium phosphatenatural abundancebuffer40 (±1.0) mM
8glutamic acidnatural abundance30 (±1.0) mM
9sodium azidenatural abundance3 (±1.0) mM
101,2-diphytanoyl-sn-glycero-3-phosphocholinenatural abundance50 % w/w
11matrix protein 2U-13C,15N-[12C,14N-ILFY]protein50 % w/w
12H2Onatural abundancesolvent100 %
Sample #3

Solvent system H2O, Temperature 298 (±5) K, pH 7.8, Details Preparation was identical to U-13C-15N M2 except that specifically isotopically labeled glucose was used. The labeling pattern resulting from [1,6-13C]-glucose is the same as from [1-13C]-glucose25 (Omicron Biochemicals) except that the [1,6-13C]-glucose results in double the labeling level per site.


#NameIsotope labelingTypeConcentration
19sodium phosphatenatural abundancebuffer40 (±1.0) mM
20glutamic acidnatural abundance30 (±1.0) mM
21sodium azidenatural abundance3 (±1.0) mM
221,2-diphytanoyl-sn-glycero-3-phosphocholinenatural abundance50 % w/w
23matrix protein 2[1,6-13C2]-Glucoseprotein50 % w/w
24H2Onatural abundancesolvent100 %
Sample #4

Solvent system H2O, Temperature 298 (±5) K, pH 7.8, Details An overnight culture in 50 mL of 90 % 2H M9, 10 % SOC media was grown from a fresh transformation in BL21-DE3 until an OD600 of 2 to 3. Cells were then pelleted by centrifugation and transferred to 1L of 2H M9 media containing 3 g 2H-13C glucose, 1 g 15N ammonium chloride, salts, and Centrum in 1 L of 99.8 % 2H D2O. The doubling time was 2 hours. At an OD600 of 0.65 to 0.75, ILV precursors were added: 75 mg alpha-keto-butyric acid,26 sodium salt 4-13C 99 %, 3,3,4,4-2H4, 98 % (CIL), and 350 mg of 2-(13C,2H2)methyl-4-(2H3)-acetolactate prepared as described previously. Cells were harvested after 24 to 36 hours, and yielded up to 5 mg of pure protein. This labeling pattern re-sults in methyl groups with isolated 13C1H spin pairs in an otherwise 2H, 12C background at nearby sites. The protein was purified and refolded in 1H buffers, resulting in complete exchange to 1H at exchangeable sites such as the backbone amides.


#NameIsotope labelingTypeConcentration
25sodium phosphatenatural abundancebuffer40 (±1.0) mM
26glutamic acidnatural abundance30 (±1.0) mM
27sodium azidenatural abundance3 (±1.0) mM
281,2-diphytanoyl-sn-glycero-3-phosphocholinealiphatic chain [U-2H]50 % w/w
29matrix protein 2U-13C,15N,2H-[12C,13C2H21H 1-Ile, 12C,13Ca,13C',13C2H21H 2-Leu, 12C,13C2H21H 2-Val]protein50 % w/w
30H2Onatural abundancesolvent100 %

Protein Blocks Logo
Calculated from 20 models in PDB: 2N70, Strand ID: A, B, C, D Detail


Release date
2016-02-23
Citation
Structure and Mechanism of the Influenza A M218-60 Dimer of Dimers
Andreas, L.B., Reese, M., Eddy, M.T., Gelev, V., Ni, Q., Miller, E.A., Emsley, L., Pintacuda, G., Chou, J.J., Griffin, R.G.
J. Am. Chem. Soc. (2015), 137, 14877-14886, PubMed 26218479 , DOI 10.1021/jacs.5b04802 ,
Related entities 1. Influenza-A M2, : 1 : 1 : 1 : 93 entities Detail
Experiments performed 11 experiments Detail
NMR combined restraints 4 contents Detail
Keywords Influenza, M2, S31N