NMR Structure of retro-KR-12: A reversed sequence of a minimalized domain derived from human cathelicidin LL-37
Polymer type: polypeptide(L)
Total | 1H | |
---|---|---|
All | 91.5 % (86 of 94) | 91.5 % (86 of 94) |
Backbone | 95.8 % (23 of 24) | 95.8 % (23 of 24) |
Sidechain | 90.0 % (63 of 70) | 90.0 % (63 of 70) |
Aromatic | 40.0 % (2 of 5) | 40.0 % (2 of 5) |
Methyl | 100.0 % (8 of 8) | 100.0 % (8 of 8) |
1. entity
RLFDKIRQVI RKSolvent system 90% H2O/10% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of H2O/D2O (9:1 v/v) atpH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | entity | natural abundance | 1 mM | |
2 | H2O | natural abundance | 90 % v/v | |
3 | D2O | natural abundance | 10 % v/v |
Solvent system 100% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of D2O at pH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | entity | natural abundance | 1 mM | |
5 | D2O | natural abundance | 100 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 90% H2O/10% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of H2O/D2O (9:1 v/v) atpH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | entity | natural abundance | 1 mM | |
2 | H2O | natural abundance | 90 % v/v | |
3 | D2O | natural abundance | 10 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 90% H2O/10% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of H2O/D2O (9:1 v/v) atpH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | entity | natural abundance | 1 mM | |
2 | H2O | natural abundance | 90 % v/v | |
3 | D2O | natural abundance | 10 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 90% H2O/10% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of H2O/D2O (9:1 v/v) atpH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | entity | natural abundance | 1 mM | |
2 | H2O | natural abundance | 90 % v/v | |
3 | D2O | natural abundance | 10 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 90% H2O/10% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of H2O/D2O (9:1 v/v) atpH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | entity | natural abundance | 1 mM | |
2 | H2O | natural abundance | 90 % v/v | |
3 | D2O | natural abundance | 10 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 100% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of D2O at pH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | entity | natural abundance | 1 mM | |
5 | D2O | natural abundance | 100 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 100% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of D2O at pH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | entity | natural abundance | 1 mM | |
5 | D2O | natural abundance | 100 % v/v |
Bruker Avance - 800 MHz BRUKER Avance HDIII equipped with a 5 mm TCI cryo probe.
State isotropic, Solvent system 100% D2O, Temperature 298 K, pH 4.5, Details 1 mM peptide dissolved in 600 microleters of D2O at pH 4.5
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | entity | natural abundance | 1 mM | |
5 | D2O | natural abundance | 100 % v/v |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_25941_2nal.nef |
Input source #2: Coordindates | 2nal.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10-- RLFDKIRQVIRK |||||||||||| RLFDKIRQVIRK
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 12 | 0 | 0 | 100.0 |
Content subtype: combined_25941_2nal.nef
Assigned chemical shifts
--------10-- RLFDKIRQVIRK |||||||||||| RLFDKIRQVIRK
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 94 | 85 | 90.4 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 24 | 23 | 95.8 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 70 | 62 | 88.6 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 8 | 7 | 87.5 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 5 | 2 | 40.0 |
Distance restraints
Dihedral angle restraints
--------10-- RLFDKIRQVIRK |||||||||| RLFDKIRQVI --------10