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NMR solution structure of PawS Derived Peptide 9 (PDP-9)
Authors
Armstrong, D.A., Franke, B., Elliott, A.G., Mylne, J.S., Rosengren, K.
Assembly
PDP-9
Entity
1. PDP-9 (polymer, Thiol state: all disulfide bound), 17 monomers, 1938.096 Da Detail

GDCYWTSTPP FFTCTPD


Formula weight
1938.096 Da
Entity Connection
peptide 1, disulfide 1 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing1:CYS3:SG1:CYS14:SG
2peptidesing1:GLY1:N1:ASP17:C

Source organism
Perymenium macrocephalum
Exptl. method
solution NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 99.0 %, Completeness (bb): 100.0 % Detail

Polymer type: polypeptide(L)

Total1H
All99.0 % (95 of 96)99.0 % (95 of 96)
Backbone100.0 % (32 of 32)100.0 % (32 of 32)
Sidechain98.4 % (63 of 64)98.4 % (63 of 64)
Aromatic95.0 % (19 of 20)95.0 % (19 of 20)
Methyl100.0 % (4 of 4)100.0 % (4 of 4)

1. PawS Derived Peptide 9 (PDP-9)

GDCYWTSTPP FFTCTPD

Sample

Solvent system methanol (CD3OH), Pressure 1 atm, Temperature 288 K


#NameIsotope labelingTypeConcentration
1PawS Derived Peptide 9 (PDP-9)natural abundanceprotein3 mg/mL
2methanol (CD3OH)solvent100 % v/v

Protein Blocks Logo
Calculated from 20 models in PDB: 2NB5, Strand ID: A Detail


Release date
2016-06-26
Citation
Natural structural diversity within a conserved cyclic peptide scaffold
Elliott, A.G., Franke, B., Armstrong, D.A., Craik, D.J., Mylne, J.S., Rosengren, K.
Amino Acids (2017), 49, 103-116, PubMed 27695949 , DOI 10.1007/s00726-016-2333-x ,
Related entities 1. PDP-9, : 1 : 1 entities Detail
Experiments performed 6 experiments Detail
NMR combined restraints 5 contents Detail
Keywords PDP, Paws Derived Peptide, cyclic backbone, plant peptide