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BMRB: 26010

2NC8

NMR structure of the Mycobacterium tuberculosis LppM (Rv2171) protein folded domain.

Authors

Barthe, P., Cohen-Gonsaud, M.

Assembly

Mycobacterium tuberculosis LppM (Rv2171) protein folded domain

Entity

1. Mycobacterium tuberculosis LppM (Rv2171) protein folded domain (polymer, Thiol state: not present), 171 monomers, 18213.03 Da Detail

GRENLYFQGH MLRVRASITI SPDDLVSGEI IAAAKPKNSK DTGPALDGDV PFSQKVAVSN YDSDGYVGSQ AVFSDLTFAE LPQLANMNSD AAGVNLSLRR NGNIVILEGR ADLTSVSDPD ADVELTVAFP AAVTSTNGDR IEPEVVQWKL KPGVVSTMSA QARYTDPNTR S

Formula weight

18213.03 Da

Source organism

Mycobacterium tuberculosis

Exptl. method

solution NMR

Refine. method

distance geometry, simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 97.1 %, Completeness: 83.4 %, Completeness (bb): 94.2 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	83.4 % (1555 of 1864)	92.1 % (882 of 958)	69.1 % (503 of 728)	95.5 % (170 of 178)
Backbone	94.2 % (948 of 1006)	95.1 % (327 of 344)	93.4 % (468 of 501)	95.0 % (153 of 161)
Sidechain	74.3 % (756 of 1017)	90.4 % (555 of 614)	47.7 % (184 of 386)	100.0 % (17 of 17)
Aromatic	49.0 % (48 of 98)	83.7 % (41 of 49)	12.5 % (6 of 48)	100.0 % (1 of 1)
Methyl	64.2 % (131 of 204)	98.0 % (100 of 102)	30.4 % (31 of 102)

1. entity

GRENLYFQGH MLRVRASITI SPDDLVSGEI IAAAKPKNSK DTGPALDGDV PFSQKVAVSN YDSDGYVGSQ AVFSDLTFAE LPQLANMNSD AAGVNLSLRR NGNIVILEGR ADLTSVSDPD ADVELTVAFP AAVTSTNGDR IEPEVVQWKL KPGVVSTMSA QARYTDPNTR S

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±1) K, pH 6.8 (±0.034)

#	Name	Isotope labeling	Concentration
1	entity	[U-100% 15N]	0.9 (±0.0045) mM
2	sodium phosphate	natural abundance	25 (±0.125) mM
3	sodium chloride	natural abundance	150 (±0.75) mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 (±1) K, pH 6.8 (±0.034)

#	Name	Isotope labeling	Concentration
4	entity	[U-100% 13C; U-100% 15N]	0.9 (±0.0045) mM
5	sodium phosphate	natural abundance	25 (±0.125) mM
6	sodium chloride	natural abundance	150 (±0.75) mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.19 ppm, Outliers: 4 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.19 ppm, Outliers: 4 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.11 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.56 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 30 models in PDB: 2NC8, Strand ID: A Detail

Release date

2016-09-07

Citation

Mycobacterium tuberculosis LppM Displays an Original Structure and Domain Composition Linked to a Dual Localization
Barthe, P., Veyron-Churlet, R., de Vish, A., Gilleron, M., Saliou, J., Nigou, J., Brodin, P., Cohen-Gonsaud, M.
Structure (2016), 24, 1788-1794, PubMed 27568926 , DOI 10.1016/j.str.2016.07.009 , Abstract

Related entities 1. Mycobacterium tuberculosis LppM (Rv2171) protein folded domain, : 1 entities Detail

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC