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BMRB: 26042

2ND0

Solution NMR structures of BRD4 ET domain with LANA peptide

Authors

Zeng, L., ZHOU, M.

Assembly

BRD4 ET with LANA

Entity

1. BRD4 ET with LANA, entity 1 (polymer, Thiol state: all free), 83 monomers, 9726.987 Da Detail

SEEEDKCKPM SYEEKRQLSL DINKLPGEKL GRVVHIIQSR EPSLKNSNPD EIEIDFETLK PSTLRELERY VTSCLRKKRK PQA

2. BRD4 ET with LANA, entity 2 (polymer, Thiol state: all free), 19 monomers, 2095.481 Da Detail

NLQSSIVKFK KPLPLTQPG

Total weight

11822.469 Da

Max. entity weight

9726.987 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

torsion angle dynamics, distance geometry

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 83.8 %, Completeness (bb): 83.8 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	83.8 % (1054 of 1258)	87.6 % (593 of 677)	76.2 % (365 of 479)	94.1 % (96 of 102)
Backbone	83.8 % (498 of 594)	98.5 % (195 of 198)	70.0 % (212 of 303)	97.8 % (91 of 93)
Sidechain	85.8 % (655 of 763)	83.1 % (398 of 479)	91.6 % (252 of 275)	55.6 % (5 of 9)
Aromatic	60.0 % (24 of 40)	60.0 % (12 of 20)	60.0 % (12 of 20)
Methyl	98.0 % (96 of 98)	100.0 % (49 of 49)	95.9 % (47 of 49)

1. entity 1

SEEEDKCKPM SYEEKRQLSL DINKLPGEKL GRVVHIIQSR EPSLKNSNPD EIEIDFETLK PSTLRELERY VTSCLRKKRK PQA

2. entity 2

NLQSSIVKFK KPLPLTQPG

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5

#	Name	Isotope labeling	Type	Concentration
7	entity_1	natural abundance	protein	0.0 ~ 0.0 mM
8	entity_2	natural abundance	protein	0.0 ~ 0.0 mM
9	sodium phosphate	natural abundance		10 mM
10	sodium chloride	natural abundance		100 mM
11	DTT	[U-100% 2H]		2 mM
12	H2O	natural abundance	solvent	90 %
13	D2O	[U-2H]	solvent	10 %

Protein Blocks Logo

Calculated from 20 models in PDB: 2ND0, Strand ID: A, B Detail

Release date

2016-06-29

Citation

Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4
Zhang, Q., Zeng, L., Shen, C., Ju, Y., Konuma, T., Zhao, C., Vakoc, C.R., ZHOU, M.
Structure (2016), 24, 1201-1208, PubMed 27291650 , DOI 10.1016/j.str.2016.04.019 , Abstract

Entries sharing articles BMRB: 2 entries Detail

  BMRB: 26041 released on 2016-06-29
    Title Solution NMR structures of BRD4 ET domain in complex with NSD3_1 peptide
  BMRB: 26043 released on 2016-06-29
    Title Solution NMR structures of BRD4 ET domain in complex with NSD3_3 peptide

Related entities 1. BRD4 ET with LANA, entity 1, : 5 : 80 entities Detail

Experiments performed 10 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5

#	Name	Isotope labeling	Type	Concentration
7	entity_1	natural abundance	protein	0.0 ~ 0.0 mM
8	entity_2	natural abundance	protein	0.0 ~ 0.0 mM
9	sodium phosphate	natural abundance		10 mM
10	sodium chloride	natural abundance		100 mM
11	DTT	[U-100% 2H]		2 mM
12	H2O	natural abundance	solvent	90 %
13	D2O	[U-2H]	solvent	10 %

2 3D HNCACB

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5

#	Name	Isotope labeling	Type	Concentration
7	entity_1	natural abundance	protein	0.0 ~ 0.0 mM
8	entity_2	natural abundance	protein	0.0 ~ 0.0 mM
9	sodium phosphate	natural abundance		10 mM
10	sodium chloride	natural abundance		100 mM
11	DTT	[U-100% 2H]		2 mM
12	H2O	natural abundance	solvent	90 %
13	D2O	[U-2H]	solvent	10 %

3 3D CBCA(CO)NH

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5

#	Name	Isotope labeling	Type	Concentration
7	entity_1	natural abundance	protein	0.0 ~ 0.0 mM
8	entity_2	natural abundance	protein	0.0 ~ 0.0 mM
9	sodium phosphate	natural abundance		10 mM
10	sodium chloride	natural abundance		100 mM
11	DTT	[U-100% 2H]		2 mM
12	H2O	natural abundance	solvent	90 %
13	D2O	[U-2H]	solvent	10 %

4 3D 1H-15N NOESY

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5

#	Name	Isotope labeling	Type	Concentration
7	entity_1	natural abundance	protein	0.0 ~ 0.0 mM
8	entity_2	natural abundance	protein	0.0 ~ 0.0 mM
9	sodium phosphate	natural abundance		10 mM
10	sodium chloride	natural abundance		100 mM
11	DTT	[U-100% 2H]		2 mM
12	H2O	natural abundance	solvent	90 %
13	D2O	[U-2H]	solvent	10 %

5 3D 1H-15N TOCSY

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5

#	Name	Isotope labeling	Type	Concentration
7	entity_1	natural abundance	protein	0.0 ~ 0.0 mM
8	entity_2	natural abundance	protein	0.0 ~ 0.0 mM
9	sodium phosphate	natural abundance		10 mM
10	sodium chloride	natural abundance		100 mM
11	DTT	[U-100% 2H]		2 mM
12	H2O	natural abundance	solvent	90 %
13	D2O	[U-2H]	solvent	10 %

6 3D 1H-13C NOESY aliphatic