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Sequence-specific 1H, 15N, and 13C resonance assignments of the autophagy-related protein LC3C
Authors
Krichel, C., Weiergraeber, O.H., Willbold, D., Neudecker, P.
Assembly
Microtubule-associated protein light chain 3C (LC3C)
Entity
1. Microtubule-associated protein light chain 3C (LC3C) (polymer, Thiol state: not present), 128 monomers, 14783.09 Da Detail

GSMPPPQKIP SVRPFKQRKS LAIRQEEVAG IRAKFPNKIP VVVERYPRET FLPPLDKTKF LVPQELTMTQ FLSIIRSRMV LRATEAFYLL VNNKSLVSMS ATMAEIYRDY KDEDGFVYMT YASQETFG


Formula weight
14783.09 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts, coupling_constants
Chem. Shift Complete
Sequence coverage: 99.2 %, Completeness: 96.5 %, Completeness (bb): 96.9 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All96.5 % (1518 of 1573)96.7 % (801 of 828)96.0 % (594 of 619)97.6 % (123 of 126)
Backbone96.9 % (723 of 746)97.6 % (243 of 249)96.3 % (366 of 380)97.4 % (114 of 117)
Sidechain96.5 % (918 of 951)96.4 % (558 of 579)96.7 % (351 of 363)100.0 % (9 of 9)
Aromatic89.1 % (114 of 128)89.1 % (57 of 64)89.1 % (57 of 64)
Methyl99.3 % (139 of 140)98.6 % (69 of 70)100.0 % (70 of 70)

1. Microtubule-associated protein light chain 3C (LC3C)

GSMPPPQKIP SVRPFKQRKS LAIRQEEVAG IRAKFPNKIP VVVERYPRET FLPPLDKTKF LVPQELTMTQ FLSIIRSRMV LRATEAFYLL VNNKSLVSMS ATMAEIYRDY KDEDGFVYMT YASQETFG

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.0


#NameIsotope labelingTypeConcentration
1Microtubule-associated protein light chain 3C (LC3C)[U-15N]0.35 ~ 0.7 mM
2PIPESnatural abundance20 mM
3sodium chloridenatural abundance150 mM
4EDTAnatural abundance0.1 mM
5glycerol[U-2H]2 % v/v
6H2Onatural abundance90 %
7D2Onatural abundance10 %
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.0


#NameIsotope labelingTypeConcentration
8Microtubule-associated protein light chain 3C (LC3C)[U-13C; U-15N]0.35 ~ 0.7 mM
9PIPESnatural abundance20 mM
10sodium chloridenatural abundance150 mM
11EDTAnatural abundance0.1 mM
12glycerolU-2H]2 % v/v
13H2Onatural abundance90 %
14D2Onatural abundance10 %
Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 293.15 K, pH 6.0


#NameIsotope labelingTypeConcentration
15Microtubule-associated protein light chain 3C (LC3C)[U-13C; U-15N]0.35 ~ 0.7 mM
16PIPESnatural abundance20 mM
17sodium chloridenatural abundance150 mM
18EDTAnatural abundance0.1 mM
19glycerol[U-2H]2 % v/v
20D2Onatural abundance100 %

LACS Plot; CA
Referencing offset: -0.16 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: -0.16 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: -0.04 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.01 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 10 models in PDB: 2NCN, Strand ID: A Detail


Coupling constant
94 J values in 1 lists
Field strength (1H) 600 MHz, Pressure 1 atm, Temperature 293.15 K, pH 6.0 Detail
Release date
2015-09-29
Citation
Sequence-specific 1H, 15N, and 13C resonance assignments of the autophagy-related protein LC3C
Krichel, C., Weiergraeber, O., Pavlidou, M., Mohrlueder, J., Schwarten, M., Willbold, D., Neudecker, P.
Biomol. NMR Assign. (2015), 10, 41-43, PubMed 26280529 , DOI 10.1007/s12104-015-9633-z ,
Related entities 1. Microtubule-associated protein light chain 3C (LC3C), : 1 : 6 : 232 entities Detail
Interaction partners 1. Microtubule-associated protein light chain 3C (LC3C), : 47 interactors Detail
Experiments performed 20 experiments Detail
NMR combined restraints 5 contents Detail
Keywords LC3C, MAP1LC3C, Microtubulus-associated proteins light chain 3C, autophagy, heteronuclear NMR, sequence-specific resonance assignments