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BMRB: 27212

5OQV

Backbone 13C and 15N Chemical Shift Assignments for fibrillar Amyloid Beta (1-42)

Authors

Gremer, L., Schoelzel, D., Schenk, C., Reinartz, E., Labahn, J., Ravelli, R., Tusche, M., Lopez-Iglesias, C., Hoyer, W., Heise, H., Willbold, D., Schroeder, G.F.

Assembly

fibrils Abeta(1-42)

Entity

1. fibrils Abeta(1-42) (polymer, Thiol state: not available), 42 monomers, 4514.037 Da Detail

DAEFRHDSGY EVHHQKLVFF AEDVGSNKGA IIGLMVGGVV IA

Formula weight

4514.037 Da

Source organism

Exptl. method

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 91.7 %, Completeness (bb): 99.4 % Detail

Polymer type: polypeptide(L)

	Total	¹³C	¹⁵N
All	91.7 % (211 of 230)	90.9 % (169 of 186)	95.5 % (42 of 44)
Backbone	99.4 % (161 of 162)	100.0 % (120 of 120)	97.6 % (41 of 42)
Sidechain	82.7 % (86 of 104)	83.3 % (85 of 102)	50.0 % (1 of 2)
Aromatic	32.0 % (8 of 25)	32.0 % (8 of 25)
Methyl	100.0 % (26 of 26)	100.0 % (26 of 26)

1. Abeta(1-42)

DAEFRHDSGY EVHHQKLVFF AEDVGSNKGA IIGLMVGGVV IA

Show sample condition

Sample

Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

Protein Blocks Logo

Calculated from 1 models in PDB: 5OQV, Strand ID: A, B, C, D, E, F, G, H, I Detail

Release date

2017-08-08

Citation

Fibril structure of amyloid-ß(1-42) by cryoelectron microscopy
Gremer, L., Scholzel, D., Schenk, C., Reinartz, E., Labahn, J., Ravelli, R., Tusche, M., Lopez-Iglesias, C., Hoyer, W., Heise, H., Willbold, D., Schroder, G.F.
Science (2017), 358, 116-119, PubMed 28882996 , DOI 10.1126/science.aao2825 , Abstract

Entries sharing articles EMDB: 1 entries Detail

EMDB: 3851 released on 2017-09-13
Title Near-atomic resolution fibril structure of complete amyloid-beta(1-42) by cryo-EM

Related entities 1. fibrils Abeta(1-42), : 1 : 44 : 3 : 54 : 17 entities Detail

Interaction partners 1. fibrils Abeta(1-42), : 96 interactors Detail

More details for 96 interactors identified by 55 citations

Experiments performed 13 experiments Detail

1 2D 13C-13C PDSD

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

2 2D 13C-13C PDSD

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

3 1D HN CP

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

4 2D SPC5_2

Instrument

Oxford AS600 - 600 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

5 2D NCACX DARR

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

6 2D NCACB DREAM

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

7 2D NCOCX DARR

Instrument

Oxford AS600 - 600 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

8 2D NCOCX DARR

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

9 3D NCOCX DARR

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

10 2D NcoCACB BSH CP DREAM

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

11 3D NcoCACB BSH CP DREAM

Instrument

Oxford 2.2K 800/63 - 800 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

12 2D 13C-13C PAR

Instrument

Varian 600/54 Premium Shielded - 600 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

13 2D 13C-13C PDSD

Instrument

Oxford AS600 - 600 MHz

Sample

State isotropic, Solvent system 69.9% H2O / 30% ACN / 0.1% TFA, Pressure 1 atm, Temperature 278 (±5) K, pH 2

#	Name	Isotope labeling	Type	Concentration
1	Abeta(1-42)	[U-13C; U-15N]		10 mg

nullKeywords Alzheimer's disease, Cryo-EM, amyloid fibrils, solid-state NMR