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NMR resonance assignments for an Legionella pneumophila ProQ-homolog
Authors
Immer, C., Hacker, C., Woehnert, J.
Assembly
Lpp1663
Entity
1. Lpp1663 (polymer, Thiol state: all free), 122 monomers, 14151.77 Da Detail

GSNQQLNATK KDKLQVIDWL IENFPNAFFK KGNQVKPLKI GIFDDLIDFY ERLDTPPFSK KSLREALSYY SASPAYLSCQ KPDTARVDIY GNEVDVVTPE QAKYAYQRYQ ERYGNKKSQD LK


Formula weight
14151.77 Da
Source organism
Legionella pneumophila
Exptl. method
solution NMR
Refine. method
torsion angle dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 97.5 %, Completeness: 90.1 %, Completeness (bb): 94.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All90.1 % (1354 of 1502)88.9 % (705 of 793)91.5 % (528 of 577)91.7 % (121 of 132)
Backbone94.6 % (679 of 718)93.8 % (227 of 242)94.7 % (342 of 361)95.7 % (110 of 115)
Sidechain87.0 % (784 of 901)86.8 % (478 of 551)88.6 % (295 of 333)64.7 % (11 of 17)
Aromatic77.1 % (111 of 144)77.8 % (56 of 72)77.5 % (55 of 71) 0.0 % (0 of 1)
Methyl98.2 % (110 of 112)98.2 % (55 of 56)98.2 % (55 of 56)

1. Lpp1663

GSNQQLNATK KDKLQVIDWL IENFPNAFFK KGNQVKPLKI GIFDDLIDFY ERLDTPPFSK KSLREALSYY SASPAYLSCQ KPDTARVDIY GNEVDVVTPE QAKYAYQRYQ ERYGNKKSQD LK

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
1Lpp1663[U-15N]400 uM
2sodium phosphatenatural abundance50 mM
3sodium chloridenatural abundance100 mM
4D2Onatural abundance10 %
5DSSnatural abundance50 uM
6beta-mercaptoethanolnatural abundance2 mM
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
7Lpp1663[U-13C; U-15N]400 uM
8sodium phosphatenatural abundance50 mM
9sodium chloridenatural abundance100 mM
10D2Onatural abundance10 %
11DSSnatural abundance50 uM
12beta-mercaptoethanolnatural abundance2 mM
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
13Lpp1663[U-15N]-Lys400 uM
14sodium phosphatenatural abundance50 mM
15sodium chloridenatural abundance100 mM
16D2Onatural abundance10 %
17DSSnatural abundance50 uM
18beta-mercaptoethanolnatural abundance2 mM
Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
19Lpp1663[U-15N]-Tyr400 uM
20sodium phosphatenatural abundance50 mM
21sodium chloridenatural abundance100 mM
22D2Onatural abundance10 %
23DSSnatural abundance50 uM
24beta-mercaptoethanolnatural abundance2 mM
Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5


#NameIsotope labelingTypeConcentration
25Lpp1663[U-15N]-Phe [U-13C]-Pro400 uM
26sodium phosphatenatural abundance50 mM
27sodium chloridenatural abundance100 mM
28D2Onatural abundance10 %
29DSSnatural abundance50 uM
30beta-mercaptoethanolnatural abundance2 mM

LACS Plot; CA
Referencing offset: 0.01 ppm, Outliers: 5 Detail
LACS Plot; CB
Referencing offset: 0.01 ppm, Outliers: 5 Detail
LACS Plot; HA
Referencing offset: 0.07 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: -0.16 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 6S10, Strand ID: A Detail


Release date
2018-04-15
Citation
NMR resonance assignments for a ProQ homolog from Legionella pneumophila
Immer, C., Hacker, C., Woehnert, J.
Biomol. NMR Assign. (2018), 12, 319-322, PubMed 29934867 , DOI 10.1007/s12104-018-9831-6 ,
Related entities 1. Lpp1663, : 1 : 43 entities Detail
Experiments performed 17 experiments Detail
Chemical shift validation 3 contents Detail
Keywords NMR-assignments, ProQ/FinO domain, RNA-binding proteins, posttranscriptional regulation, sRNA, triple resonance experiments