BMRBj - BMREntryMaster

Found 1 Document (0.871 seconds)

BMRB: 30003

5HP0

Solution Structure of TAZ2-p53AD2

Authors

Krois, A.S., Ferreon, J.C., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

Assembly

CREB-binding protein,Cellular tumor antigen p53 (E.C.2.3.1.48)

Entity

1. CREB-binding protein,Cellular tumor antigen p53 fusion protein (polymer, Thiol state: free and other bound), 122 monomers, 13685.69 Da Detail

SPQESRRLSI QRCIQSLVHA CQCRNANCSL PSCQKMKRVV QHTKGCKRKT NGGCPVCKQL IALCCYHAKH CQENKCPVPF CLNIKHKLRQ QQGSGSGSQA MDDLMLSPDD IEQWFTEDPG PD

2. ZINC ION (non-polymer), 65.409 × 3 Da

Total weight

13881.917 Da

Max. entity weight

13685.69 Da

Entity Connection

na 9 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	na	sing	1:CYS23:SG	2:ZN1:ZN
2	na	sing	1:CYS28:SG	2:ZN1:ZN
3	na	sing	1:CYS33:SG	2:ZN1:ZN
4	na	sing	1:CYS46:SG	2:ZN1:ZN
5	na	sing	1:CYS54:SG	2:ZN1:ZN
6	na	sing	1:CYS57:SG	2:ZN1:ZN
7	na	sing	1:CYS71:SG	2:ZN1:ZN
8	na	sing	1:CYS76:SG	2:ZN1:ZN
9	na	sing	1:CYS81:SG	2:ZN1:ZN

Source organism

Mus musculus , Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing, molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.2 %, Completeness: 88.0 %, Completeness (bb): 80.7 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	88.0 % (1241 of 1410)	96.0 % (721 of 751)	75.3 % (396 of 526)	93.2 % (124 of 133)
Backbone	80.7 % (578 of 716)	94.7 % (230 of 243)	67.1 % (241 of 359)	93.9 % (107 of 114)
Sidechain	95.8 % (775 of 809)	96.7 % (491 of 508)	94.7 % (267 of 282)	89.5 % (17 of 19)
Aromatic	88.3 % (53 of 60)	100.0 % (30 of 30)	75.9 % (22 of 29)	100.0 % (1 of 1)
Methyl	100.0 % (92 of 92)	100.0 % (46 of 46)	100.0 % (46 of 46)

1. CREB-binding protein,Cellular tumor antigen p53 fusion protein

SPQESRRLSI QRCIQSLVHA CQCRNANCSL PSCQKMKRVV QHTKGCKRKT NGGCPVCKQL IALCCYHAKH CQENKCPVPF CLNIKHKLRQ QQGSGSGSQA MDDLMLSPDD IEQWFTEDPG PD

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	D2O	[U-2H]	10 %
2	DTT	natural abundance	2 mM
3	TAZ2-p53AD2	[U-13C; U-15N]	1 mM
4	TRIS	natural abundance	20 mM
5	sodium chloride	natural abundance	50 mM
6	H2O	[U-2H]	90 %

Sample #2

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
7	D2O	[U-2H]	99 %
8	DTT	[U-2H]	2 mM
9	TAZ2-p53AD2	[U-13C; U-15N]	1 mM
10	TRIS	[U-2H]	20 mM
11	sodium chloride	natural abundance	50 mM
12	H2O	[U-2H]	1 %

Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 5 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
13	D2O	[U-2H]	5 %
14	DTT	natural abundance	2 mM
15	TAZ2-p53AD2	[U-13C; U-15N]	1 mM
16	TRIS	natural abundance	20 mM
17	sodium chloride	natural abundance	50 mM
18	H2O	[U-2H]	95 %

Sample #4

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C] TAZ2, 1 mM p53AD2(38-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 5 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
19	D2O	[U-2H]	5 %
20	DTT	[U-2H]	2 mM
21	TAZ2	[U-13C]	1 mM
22	TRIS	[U-2H]	20 mM
23	p53AD2(38-61)	natural abundance	1 mM
24	sodium chloride	natural abundance	50 mM
25	H2O	[U-2H]	95 %

Sample #5

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C] p53AD2, 1 mM TAZ2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
26	D2O	[U-2H]	99 %
27	DTT	[U-2H]	2 mM
28	TAZ2	natural abundance	1 mM
29	TRIS	[U-2H]	20 mM
30	p53AD2	[U-13C]	1 mM
31	sodium chloride	natural abundance	50 mM
32	H2O	[U-2H]	1 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: -0.03 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: -0.03 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: 0.0 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 5HP0, Strand ID: A Detail

Release date

2016-03-13

Citation

Recognition of the disordered p53 transactivation domain by the transcriptional adapter zinc finger domains of CREB-binding protein
Krois, A.S., Ferreon, J.C., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.
Proc. Natl. Acad. Sci. U. S. A. (2016), 113, E1853-E1862, PubMed 26976603 , DOI 10.1073/pnas.1602487113 , Abstract

Related entities 1. CREB-binding protein,Cellular tumor antigen p53 fusion protein, : 1 : 18 entities Detail

Experiments performed 5 experiments Detail

1 3D 1H-15N NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	D2O	[U-2H]	10 %
2	DTT	natural abundance	2 mM
3	TAZ2-p53AD2	[U-13C; U-15N]	1 mM
4	TRIS	natural abundance	20 mM
5	sodium chloride	natural abundance	50 mM
6	H2O	[U-2H]	90 %

2 3D 1H-13C NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM [U-13C; U-15N] TAZ2-p53AD2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
7	D2O	[U-2H]	99 %
8	DTT	[U-2H]	2 mM
9	TAZ2-p53AD2	[U-13C; U-15N]	1 mM
10	TRIS	[U-2H]	20 mM
11	sodium chloride	natural abundance	50 mM
12	H2O	[U-2H]	1 %

3 3D HNCACB

Instrument

Bruker DRX - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
13	D2O	[U-2H]	5 %
14	DTT	natural abundance	2 mM
15	TAZ2-p53AD2	[U-13C; U-15N]	1 mM
16	TRIS	natural abundance	20 mM
17	sodium chloride	natural abundance	50 mM
18	H2O	[U-2H]	95 %

4 3D HCCH-COSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM [U-13C] TAZ2, 1 mM p53AD2(38-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 5 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
19	D2O	[U-2H]	5 %
20	DTT	[U-2H]	2 mM
21	TAZ2	[U-13C]	1 mM
22	TRIS	[U-2H]	20 mM
23	p53AD2(38-61)	natural abundance	1 mM
24	sodium chloride	natural abundance	50 mM
25	H2O	[U-2H]	95 %

5 3D HCCH-COSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM [U-13C] p53AD2, 1 mM TAZ2, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
26	D2O	[U-2H]	99 %
27	DTT	[U-2H]	2 mM
28	TAZ2	natural abundance	1 mM
29	TRIS	[U-2H]	20 mM
30	p53AD2	[U-13C]	1 mM
31	sodium chloride	natural abundance	50 mM
32	H2O	[U-2H]	1 %

nullKeywords TRANSFERASE, binding motif, intrinsically disordered protein, protein-protein interaction, transcriptional coactivator, tumor suppressor

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Found 1 Document (0.871 seconds)

BMRB: 30003

Sample #1

Sample #2

Sample #3

Sample #4

Sample #5

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. CREB-binding protein,Cellular tumor antigen p53 fusion protein, : 1 : 18 entities Detail

Experiments performed 5 experiments Detail

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