BMRBj - BMREntryMaster

Found 1 Document (2.251 seconds)

BMRB: 30004

5HPD

Solution Structure of TAZ2-p53TAD

Authors

Krois, A.S., Ferreon, J.C., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.

Assembly

CREB-binding protein,Cellular tumor antigen p53 (E.C.2.3.1.48)

Entity

1. CREB-binding protein,Cellular tumor antigen p53 fusion protein (polymer, Thiol state: free and other bound), 158 monomers, 17688.03 Da Detail

SPQESRRLSI QRCIQSLVHA CQCRNANCSL PSCQKMKRVV QHTKGCKRKT NGGCPVCKQL IALCCYHAKH CQENKCPVPF CLNIKHKLRQ QQGSGSGSEE PQSDPSVEPP LSQETFSDLW KLLPENNVLS PLPSQAMDDL MLSPDDIEQW FTEDPGPD

2. ZINC ION (non-polymer), 65.409 × 3 Da

Total weight

17884.256 Da

Max. entity weight

17688.03 Da

Entity Connection

na 9 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	na	sing	1:CYS23:SG	2:ZN1:ZN
2	na	sing	1:CYS28:SG	2:ZN1:ZN
3	na	sing	1:CYS33:SG	2:ZN1:ZN
4	na	sing	1:CYS46:SG	2:ZN1:ZN
5	na	sing	1:CYS54:SG	2:ZN1:ZN
6	na	sing	1:CYS57:SG	2:ZN1:ZN
7	na	sing	1:CYS71:SG	2:ZN1:ZN
8	na	sing	1:CYS76:SG	2:ZN1:ZN
9	na	sing	1:CYS81:SG	2:ZN1:ZN

Source organism

Mus musculus , Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing, molecular dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 88.9 %, Completeness (bb): 80.7 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	88.9 % (1629 of 1833)	97.2 % (948 of 975)	76.3 % (527 of 691)	92.2 % (154 of 167)
Backbone	80.7 % (741 of 918)	95.8 % (295 of 308)	67.5 % (315 of 467)	91.6 % (131 of 143)
Sidechain	96.9 % (1033 of 1066)	97.9 % (653 of 667)	95.2 % (357 of 375)	95.8 % (23 of 24)
Aromatic	89.0 % (73 of 82)	97.6 % (40 of 41)	79.5 % (31 of 39)	100.0 % (2 of 2)
Methyl	98.4 % (124 of 126)	98.4 % (62 of 63)	98.4 % (62 of 63)

1. CREB-binding protein,Cellular tumor antigen p53 fusion protein

SPQESRRLSI QRCIQSLVHA CQCRNANCSL PSCQKMKRVV QHTKGCKRKT NGGCPVCKQL IALCCYHAKH CQENKCPVPF CLNIKHKLRQ QQGSGSGSEE PQSDPSVEPP LSQETFSDLW KLLPENNVLS PLPSQAMDDL MLSPDDIEQW FTEDPGPD

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1.75 mM [U-13C; U-15N] TAZ2-p53TAD, 20 mM TRIS, 50 mM sodium chloride, 1 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	D2O	[U-2H]	10 %
2	DTT	natural abundance	1 mM
3	TAZ2-p53TAD	[U-13C; U-15N]	1.75 (±0.25) mM
4	TRIS	natural abundance	20 mM
5	sodium chloride	natural abundance	50 mM
6	H2O	[U-2H]	90 %

Sample #2

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1.75 mM [U-13C; U-15N] TAZ2-p53TAD, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 1 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
7	D2O	[U-2H]	99 %
8	DTT	[U-2H]	1 mM
9	TAZ2-p53TAD	[U-13C; U-15N]	1.75 (±0.25) mM
10	TRIS	[U-2H]	20 mM
11	sodium chloride	natural abundance	50 mM
12	H2O	[U-2H]	1 %

Sample #3

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C] TAZ2, 1 mM p53(13-37, 1 mM p53(38-61), 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 20 mM [U-2H] TRIS, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
13	D2O	[U-2H]	99 %
14	DTT	[U-2H]	2 mM
15	TAZ2	[U-13C]	1 mM
16	TRIS	[U-2H]	20 mM
17	p53(13-37	natural abundance	1 mM
18	p53(38-61)	natural abundance	1 mM
19	sodium chloride	natural abundance	50 mM
20	H2O	[U-2H]	1 %

Sample #4

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM TAZ2, 1 mM [U-13C] p53(13-37), 1 mM [U-13C] p53(38-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
21	D2O	[U-2H]	99 %
22	DTT	[U-2H]	2 mM
23	TAZ2	natural abundance	1 mM
24	TRIS	[U-2H]	20 mM
25	p53(13-37)	[U-13C]	1 mM
26	p53(38-61)	[U-13C]	1 mM
27	sodium chloride	natural abundance	50 mM
28	H2O	[U-2H]	1 %

Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM TAZ2, 1 mM [U-15N] p53(13-61), 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
29	D2O	[U-2H]	10 %
30	DTT	natural abundance	2 mM
31	TAZ2	natural abundance	1 mM
32	TRIS	natural abundance	20 mM
33	p53(13-61)	[U-15N]	1 mM
34	sodium chloride	natural abundance	50 mM
35	H2O	[U-2H]	90 %

Sample #6

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-15N] TAZ2, 1 mM p53(13-61), 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
36	D2O	[U-2H]	10 %
37	DTT	natural abundance	2 mM
38	TAZ2	[U-15N]	1 mM
39	TRIS	natural abundance	20 mM
40	p53(13-61)	natural abundance	1 mM
41	sodium chloride	natural abundance	50 mM
42	H2O	[U-2H]	90 %

Sample #7

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM TAZ2, 1 mM [U-13C] p53(13-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
43	D2O	[U-2H]	99 %
44	DTT	[U-2H]	2 mM
45	TAZ2	natural abundance	1 mM
46	TRIS	[U-2H]	20 mM
47	p53(13-61)	[U-13C]	1 mM
48	sodium chloride	natural abundance	50 mM
49	H2O	[U-2H]	1 %

Sample #8

Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-13C] TAZ2, 1 mM p53(13-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
50	D2O	[U-2H]	99 %
51	DTT	[U-2H]	2 mM
52	TAZ2	[U-13C]	1 mM
53	TRIS	[U-2H]	20 mM
54	p53(13-61)	natural abundance	1 mM
55	sodium chloride	natural abundance	50 mM
56	H2O	[U-2H]	1 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: -0.11 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: -0.11 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	external	indirect	0.2514495
¹H	DSS	methyl protons	external	direct	1.0
¹⁵N	DSS	methyl protons	external	indirect	0.1013291

Referencing offset: 0.03 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 5HPD, Strand ID: A Detail

Release date

2016-03-13

Citation

Recognition of the disordered p53 transactivation domain by the transcriptional adapter zinc finger domains of CREB-binding protein
Krois, A.S., Ferreon, J.C., Martinez-Yamout, M.A., Dyson, H.J., Wright, P.E.
Proc. Natl. Acad. Sci. U. S. A. (2016), 113, E1853-E1862, PubMed 26976603 , DOI 10.1073/pnas.1602487113 , Abstract

Related entities 1. CREB-binding protein,Cellular tumor antigen p53 fusion protein, : 1 : 1 entities Detail

Experiments performed 10 experiments Detail

1 3D 1H-15N NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1.75 mM [U-13C; U-15N] TAZ2-p53TAD, 20 mM TRIS, 50 mM sodium chloride, 1 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	D2O	[U-2H]	10 %
2	DTT	natural abundance	1 mM
3	TAZ2-p53TAD	[U-13C; U-15N]	1.75 (±0.25) mM
4	TRIS	natural abundance	20 mM
5	sodium chloride	natural abundance	50 mM
6	H2O	[U-2H]	90 %

2 3D 1H-13C NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1.75 mM [U-13C; U-15N] TAZ2-p53TAD, 20 mM [U-2H] TRIS, 50 mM sodium chloride, 1 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
7	D2O	[U-2H]	99 %
8	DTT	[U-2H]	1 mM
9	TAZ2-p53TAD	[U-13C; U-15N]	1.75 (±0.25) mM
10	TRIS	[U-2H]	20 mM
11	sodium chloride	natural abundance	50 mM
12	H2O	[U-2H]	1 %

3 3D HNCACB

Instrument

Bruker DRX - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	D2O	[U-2H]	10 %
2	DTT	natural abundance	1 mM
3	TAZ2-p53TAD	[U-13C; U-15N]	1.75 (±0.25) mM
4	TRIS	natural abundance	20 mM
5	sodium chloride	natural abundance	50 mM
6	H2O	[U-2H]	90 %

4 3D 1H-15N TOCSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM TAZ2, 1 mM [U-15N] p53(13-61), 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
29	D2O	[U-2H]	10 %
30	DTT	natural abundance	2 mM
31	TAZ2	natural abundance	1 mM
32	TRIS	natural abundance	20 mM
33	p53(13-61)	[U-15N]	1 mM
34	sodium chloride	natural abundance	50 mM
35	H2O	[U-2H]	90 %

5 3D 1H-13C NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM TAZ2, 1 mM [U-13C] p53(13-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
43	D2O	[U-2H]	99 %
44	DTT	[U-2H]	2 mM
45	TAZ2	natural abundance	1 mM
46	TRIS	[U-2H]	20 mM
47	p53(13-61)	[U-13C]	1 mM
48	sodium chloride	natural abundance	50 mM
49	H2O	[U-2H]	1 %

6 3D 1H-15N NOESY

Instrument

Bruker Avance - 900 MHz

Sample

#	Name	Isotope labeling	Concentration
29	D2O	[U-2H]	10 %
30	DTT	natural abundance	2 mM
31	TAZ2	natural abundance	1 mM
32	TRIS	natural abundance	20 mM
33	p53(13-61)	[U-15N]	1 mM
34	sodium chloride	natural abundance	50 mM
35	H2O	[U-2H]	90 %

7 3D 1H-13C NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM [U-13C] TAZ2, 1 mM p53(13-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
50	D2O	[U-2H]	99 %
51	DTT	[U-2H]	2 mM
52	TAZ2	[U-13C]	1 mM
53	TRIS	[U-2H]	20 mM
54	p53(13-61)	natural abundance	1 mM
55	sodium chloride	natural abundance	50 mM
56	H2O	[U-2H]	1 %

8 3D 1H-15N NOESY

Instrument

Bruker Avance - 900 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.8, Details 1 mM [U-15N] TAZ2, 1 mM p53(13-61), 20 mM TRIS, 50 mM sodium chloride, 2 mM DTT, 10 % [U-2H] D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
36	D2O	[U-2H]	10 %
37	DTT	natural abundance	2 mM
38	TAZ2	[U-15N]	1 mM
39	TRIS	natural abundance	20 mM
40	p53(13-61)	natural abundance	1 mM
41	sodium chloride	natural abundance	50 mM
42	H2O	[U-2H]	90 %

9 3D HCCH-COSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM [U-13C] TAZ2, 1 mM p53(13-37, 1 mM p53(38-61), 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 20 mM [U-2H] TRIS, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
13	D2O	[U-2H]	99 %
14	DTT	[U-2H]	2 mM
15	TAZ2	[U-13C]	1 mM
16	TRIS	[U-2H]	20 mM
17	p53(13-37	natural abundance	1 mM
18	p53(38-61)	natural abundance	1 mM
19	sodium chloride	natural abundance	50 mM
20	H2O	[U-2H]	1 %

10 3D HCCH-COSY

Instrument

Bruker DRX - 600 MHz

Sample

State isotropic, Solvent system 99% D2O, 1% H2O, Pressure 1 atm, Temperature 305 K, pH 6.4, Details 1 mM TAZ2, 1 mM [U-13C] p53(13-37), 1 mM [U-13C] p53(38-61), 20 mM [U-2H] TRIS, 50 mM sodium chloride, 2 mM [U-2H] DTT, 99 % [U-2H] D2O, 99% D2O, 1% H2O

#	Name	Isotope labeling	Concentration
21	D2O	[U-2H]	99 %
22	DTT	[U-2H]	2 mM
23	TAZ2	natural abundance	1 mM
24	TRIS	[U-2H]	20 mM
25	p53(13-37)	[U-13C]	1 mM
26	p53(38-61)	[U-13C]	1 mM
27	sodium chloride	natural abundance	50 mM
28	H2O	[U-2H]	1 %

nullKeywords TRANSFERASE, binding motif, intrinsically disordered protein, protein-protein interaction, transcriptional coactivator, tumor suppressor

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Found 1 Document (2.251 seconds)

BMRB: 30004

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Sample #8

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. CREB-binding protein,Cellular tumor antigen p53 fusion protein, : 1 : 1 entities Detail

Experiments performed 10 experiments Detail

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