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NMR solution structure of Mayaro virus macro domain
Authors
Melekis, E., Tsika, A.C., Bentrop, D., Papageorgiou, N., Coutard, B., Spyroulias, G.A.
Assembly
Macro domain (E.C.2.1.1.-,2.7.7.-,3.1.3.33,3.4.22.-,3.6.1.15,3.6.4.13,2.7.7.48)
Entity
1. Macro domain (E.C.2.1.1.-,2.7.7.-,3.1.3.33,3.4.22.-,3.6.1.15,3.6.4.13,2.7.7.48) (polymer, Thiol state: all free), 166 monomers, 18117.24 Da Detail

MAPAYTVKRA DIATAIEDAV VNAANHRGQV GDGVCRAVAR KWPQAFRNAA TPVGTAKTVK CDETYIIHAV GPNFNNTSEA EGDRDLAAAY RAVAAEINRL SISSVAIPLL STGIFSAGKD RVHQSLSHLL AAMDTTEARV TIYCRDKTWE QKIKTVLQNR HHHHHH


Formula weight
18117.24 Da
Source organism
Mayaro virus (strain Brazil)
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 92.2 %, Completeness: 73.9 %, Completeness (bb): 75.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All73.9 % (1356 of 1835)79.9 % (750 of 939)64.6 % (465 of 720)80.1 % (141 of 176)
Backbone75.6 % (745 of 986)87.8 % (294 of 335)63.7 % (312 of 490)86.3 % (139 of 161)
Sidechain74.7 % (752 of 1007)75.5 % (456 of 604)75.8 % (294 of 388)13.3 % (2 of 15)
Aromatic10.3 % (13 of 126)11.1 % (7 of 63) 8.2 % (5 of 61)50.0 % (1 of 2)
Methyl88.0 % (183 of 208)88.5 % (92 of 104)87.5 % (91 of 104)

1. entity 1

MAPAYTVKRA DIATAIEDAV VNAANHRGQV GDGVCRAVAR KWPQAFRNAA TPVGTAKTVK CDETYIIHAV GPNFNNTSEA EGDRDLAAAY RAVAAEINRL SISSVAIPLL STGIFSAGKD RVHQSLSHLL AAMDTTEARV TIYCRDKTWE QKIKTVLQNR HHHHHH

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1Mayaro virus' macro domainnatural abundance0.4 mM
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM [U-99% 15N] Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
2Mayaro virus' macro domain[U-99% 15N]0.4 mM
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM [U-99% 13C; U-99% 15N] Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
3Mayaro virus' macro domain[U-99% 13C; U-99% 15N]0.4 mM
Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM [U-15N]-Ala-Leu-Val Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
4Mayaro virus' macro domain[U-15N]-Ala-Leu-Val0.4 mM
Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM [U-14N]-Arg Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
5Mayaro virus' macro domain[U-14N]-Arg0.4 mM
Sample #6

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM [U-14N]-Asn-Cys Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
6Mayaro virus' macro domain[U-14N]-Asn-Cys0.4 mM
Sample #7

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.4 mM [U-100% 13C; U-100% 15N; U-80% 2H] Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
7Mayaro virus' macro domain[U-100% 13C; U-100% 15N; U-80% 2H]0.4 mM
Sample #8

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.5 mM Mayaro virus' macro domain, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
8Mayaro virus' macro domainnatural abundance0.5 mM

LACS Plot; CA
Referencing offset: 0.38 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: 0.38 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.06 ppm, Outliers: 3 Detail
Protein Blocks Logo
Calculated from 21 models in PDB: 5IQ5, Strand ID: A Detail


Release date
2016-12-07
Citation 1
NMR study of non-structural proteins--part I: (1)H, (13)C, (15)N backbone and side-chain resonance assignment of macro domain from Mayaro virus (MAYV)
Melekis, E., Tsika, A.C., Lichiere, J., Chasapis, C.T., Margiolaki, I., Papageorgiou, N., Coutard, B., Bentrop, D., Spyroulias, G.A.
Biomol. NMR Assign. (2015), 9, 191-195, PubMed 25217003 , DOI 10.1007/s12104-014-9572-0 ,
Citation 2
NMR study of non-structural proteins--part II: (1)H, (13)C, (15)N backbone and side-chain resonance assignment of macro domain from Venezuelan equine encephalitis virus (VEEV)
Papageorgiou, N., Watier, Y., Saunders, L., Coutard, B., Lantez, V., Gould, E.A., Fitch, A.N., Wright, J.P., Canard, B., Margiolaki, I.
Biomol. NMR Assign. (2015), 9, 247-251, PubMed 25291978 , DOI 10.1007/s12104-014-9584-9 ,
Citation 3
Preliminary insights into the non structural protein 3 macro domain of the Mayaro virus by powder diffraction
Melekis, E., Tsika, A.C., Bentrop, D., Papageorgiou, N., Coutard, B.
Zeitschfrift fur Kristallographie (2010), 225, 576-580, DOI 10.1524/zkri.2010.1348
Related entities 1. Macro domain (E.C.2.1.1.-,2.7.7.-,3.1.3.33,3.4.22.-,3.6.1.15,3.6.4.13,2.7.7.48), : 1 : 1 : 81 entities Detail
Experiments performed 21 experiments Detail
NMR combined restraints 3 contents Detail
Keywords ADP ribose binding module, Alphavirus, Mayaro virus, NMR spectroscopy, Viral protein, viral macro domains