BMRB: 30111

Structural impact of single ribonucleotides in DNA

Authors

Evich, M., Spring-Connell, A.M., Storici, F.

Assembly

DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3')

Entity

1. DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), entity 1 (polymer, Thiol state: not present), 9 monomers, 2818.795 Da Detail

ATCCGGTAG

2. DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), entity 2 (polymer, Thiol state: not present), 9 monomers, 2778.771 Da Detail

CTACCGGAT

Total weight

5597.566 Da

Max. entity weight

2818.795 Da

Source organism

synthetic construct

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 70.6 %, Completeness (bb): 73.6 % Detail

Download

• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
• CSV
• TSV

Polymer type: polydeoxyribonucleotide

	Total	1H	31P
All	70.6 % (137 of 194)	68.8 % (121 of 176)	88.9 % (16 of 18)
Suger, PO4	73.6 % (106 of 144)	71.4 % (90 of 126)	88.9 % (16 of 18)
Nucleobase	62.0 % (31 of 50)	62.0 % (31 of 50)
Aromatic	75.0 % (27 of 36)	75.0 % (27 of 36)
Methyl	100.0 % (4 of 4)	100.0 % (4 of 4)

1. entity 1

ATCCGGTAG

2. entity 2

CTACCGGAT

Show sample condition

Sample #1

Solvent system 100% D2O, Pressure 1 atm, Temperature 294 K, pH 6.6, Details 1 mM DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), 100 % 100% deuterium D20, 100 mM sodium chloride, 10 mM sodium phosphate, 100% D2O

#	Name	Isotope labeling	Type	Concentration
1	D20	100% deuterium		100 %
2	DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3')	natural abundance		1 mM
3	DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3')	natural abundance		1 mM
4	sodium chloride	natural abundance		100 mM
5	sodium phosphate	natural abundance		10 mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 294 K, pH 6.6, Details 1 mM DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3'), 1 mM DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3'), 100 mM sodium chloride, 10 mM sodium phosphate, 10 % 100% deuterium D2O, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
6	D2O	100% deuterium		10 %
7	DNA (5'-D(*AP*TP*CP*CP*GP*GP*TP*AP*G)-3')	natural abundance		1 mM
8	DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*AP*T)-3')	natural abundance		1 mM
9	sodium chloride	natural abundance		100 mM
10	sodium phosphate	natural abundance		10 mM

Hide sample codition

Release date

2016-08-21

Citation

Structural impact of single ribonucleotides in DNA
Evich, M., Spring-Connell, A.M., Storici, F., Germann, M.W.
Chembiochem. (2016), 17, 1968-1977, PubMed 27504600 , DOI 10.1002/cbic.201600385 , Abstract

Experiments performed 10 experiments Detail