BMRB: 30184

Solution structure of parallel stranded adenosine duplex r(AAAA)-dA-r(AAA)

Authors

Denisov, A., Noronha, A., Gehring, K., Wilds, C.

Assembly

RNA

Entity

1. RNA (polymer, Thiol state: not present), 9 monomers, 3038.044 × 2 Da Detail

TXXXXAXXX

Total weight

6076.088 Da

Max. entity weight

3038.044 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 96 assignments Detail

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ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	DT	H1'	H	5.62	0.01	1
2	1	1	DT	H2'	H	2.41	0.01	1
3	1	1	DT	H2''	H	2.53	0.01	1
4	1	1	DT	H3	H	10.49	0.01	1
5	1	1	DT	H3'	H	4.52	0.01	1
6	1	1	DT	H4'	H	4.05	0.01	1
7	1	1	DT	H6	H	7.59	0.01	1
8	1	1	DT	H71	H	1.30	0.01	1
9	1	1	DT	H72	H	1.30	0.01	1
10	1	1	DT	H73	H	1.30	0.01	1
11	1	2	A2M	H1'	H	6.26	0.01	1
12	1	2	A2M	H2	H	7.80	0.01	1
13	1	2	A2M	H2'	H	4.35	0.01	1
14	1	2	A2M	H3'	H	4.58	0.01	1
15	1	2	A2M	H4'	H	4.44	0.01	1
16	1	2	A2M	H8	H	8.39	0.01	1
17	1	2	A2M	H61	H	8.85	0.01	1
18	1	2	A2M	H62	H	7.43	0.01	1
19	1	2	A2M	HM'1	H	3.79	0.01	1
20	1	2	A2M	HM'2	H	3.79	0.01	1
21	1	2	A2M	HM'3	H	3.79	0.01	1
22	1	3	A2M	H1'	H	5.75	0.01	1
23	1	3	A2M	H2	H	8.33	0.01	1
24	1	3	A2M	H2'	H	4.26	0.01	1
25	1	3	A2M	H3'	H	4.09	0.01	1
26	1	3	A2M	H4'	H	4.50	0.01	1
27	1	3	A2M	H8	H	7.71	0.01	1
28	1	3	A2M	H61	H	9.49	0.01	1
29	1	3	A2M	H62	H	8.09	0.01	1
30	1	3	A2M	HM'1	H	3.80	0.01	1
31	1	3	A2M	HM'2	H	3.80	0.01	1
32	1	3	A2M	HM'3	H	3.80	0.01	1
33	1	4	A2M	H1'	H	6.06	0.01	1
34	1	4	A2M	H2	H	8.32	0.01	1
35	1	4	A2M	H2'	H	4.16	0.01	1
36	1	4	A2M	H3'	H	4.09	0.01	1
37	1	4	A2M	H4'	H	4.48	0.01	1
38	1	4	A2M	H8	H	7.41	0.01	1
39	1	4	A2M	H61	H	9.02	0.01	1
40	1	4	A2M	H62	H	7.68	0.01	1
41	1	4	A2M	HM'1	H	3.82	0.01	1
42	1	4	A2M	HM'2	H	3.82	0.01	1
43	1	4	A2M	HM'3	H	3.82	0.01	1
44	1	5	A2M	H1'	H	6.11	0.01	1
45	1	5	A2M	H2	H	8.33	0.01	1
46	1	5	A2M	H2'	H	4.22	0.01	1
47	1	5	A2M	H3'	H	4.05	0.01	1
48	1	5	A2M	H4'	H	4.47	0.01	1
49	1	5	A2M	H8	H	7.34	0.01	1
50	1	5	A2M	H61	H	9.15	0.01	1
51	1	5	A2M	H62	H	8.07	0.01	1
52	1	5	A2M	HM'1	H	3.83	0.01	1
53	1	5	A2M	HM'2	H	3.83	0.01	1
54	1	5	A2M	HM'3	H	3.83	0.01	1
55	1	6	DA	H1'	H	6.22	0.01	1
56	1	6	DA	H2	H	8.43	0.01	1
57	1	6	DA	H2'	H	2.75	0.01	1
58	1	6	DA	H2''	H	2.80	0.01	1
59	1	6	DA	H3'	H	4.09	0.01	1
60	1	6	DA	H4'	H	4.28	0.01	1
61	1	6	DA	H8	H	7.27	0.01	1
62	1	6	DA	H61	H	9.30	0.01	1
63	1	6	DA	H62	H	8.32	0.01	1
64	1	7	A2M	H1'	H	6.20	0.01	1
65	1	7	A2M	H2	H	8.28	0.01	1
66	1	7	A2M	H2'	H	4.29	0.01	1
67	1	7	A2M	H3'	H	4.23	0.01	1
68	1	7	A2M	H4'	H	4.48	0.01	1
69	1	7	A2M	H8	H	7.30	0.01	1
70	1	7	A2M	H61	H	9.25	0.01	1
71	1	7	A2M	H62	H	8.29	0.01	1
72	1	7	A2M	HM'1	H	3.90	0.01	1
73	1	7	A2M	HM'2	H	3.90	0.01	1
74	1	7	A2M	HM'3	H	3.90	0.01	1
75	1	8	A2M	H1'	H	6.30	0.01	1
76	1	8	A2M	H2	H	8.26	0.01	1
77	1	8	A2M	H2'	H	4.27	0.01	1
78	1	8	A2M	H3'	H	4.35	0.01	1
79	1	8	A2M	H4'	H	4.61	0.01	1
80	1	8	A2M	H8	H	7.49	0.01	1
81	1	8	A2M	H61	H	9.31	0.01	1
82	1	8	A2M	H62	H	8.43	0.01	1
83	1	8	A2M	HM'1	H	3.87	0.01	1
84	1	8	A2M	HM'2	H	3.87	0.01	1
85	1	8	A2M	HM'3	H	3.87	0.01	1
86	1	9	A2M	H1'	H	6.22	0.01	1
87	1	9	A2M	H2	H	8.41	0.01	1
88	1	9	A2M	H2'	H	3.72	0.01	1
89	1	9	A2M	H3'	H	4.02	0.01	1
90	1	9	A2M	H4'	H	4.27	0.01	1
91	1	9	A2M	H8	H	7.66	0.01	1
92	1	9	A2M	H61	H	9.32	0.01	1
93	1	9	A2M	H62	H	8.02	0.01	1
94	1	9	A2M	HM'1	H	3.63	0.01	1
95	1	9	A2M	HM'2	H	3.63	0.01	1
96	1	9	A2M	HM'3	H	3.63	0.01	1

Release date

2016-11-17

Citation

Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA
Copp, W., Denisov, A.Y., Xie, J., Noronha, A.M., Liczner, C., Safaee, N., Wilds, C.J., Gehring, K.
Nucleic Acids Res. (2017), 45, 10321-10331, PubMed 28973475 , DOI 10.1093/nar/gkx713 , Abstract

Experiments performed 5 experiments Detail

NMR combined restraints 2 contents Detail