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Solution NMR Structure of Lasso Peptide Acinetodin
Authors
Bushin, L.B., Metelev, M., Severinov, K., Seyedsayamdost, M.R.
Assembly
Acinetodin
Entity
1. Acinetodin (polymer, Thiol state: not present), 18 monomers, 1975.117 Da Detail

GGKGPIFETW VTEGNYYG


Formula weight
1975.117 Da
Source organism
Acinetobacter gyllenbergii CIP 110306 = MTCC 11365
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 100.0 %, Completeness: 94.3 %, Completeness (bb): 92.5 % Detail

Polymer type: polypeptide(L)

Total1H
All94.3 % (99 of 105)94.3 % (99 of 105)
Backbone92.5 % (37 of 40)92.5 % (37 of 40)
Sidechain95.4 % (62 of 65)95.4 % (62 of 65)
Aromatic100.0 % (19 of 19)100.0 % (19 of 19)
Methyl100.0 % (6 of 6)100.0 % (6 of 6)

1. Acinetodin

GGKGPIFETW VTEGNYYG

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 283 K, pH 7, Details 10 mg/mL NA Acinetodin, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1AcinetodinNA10 mg/mL
2H2Onatural abundance90 %
3D2Onatural abundance10 %

Protein Blocks Logo
Calculated from 10 models in PDB: 5UI6, Strand ID: A Detail


Release date
2017-01-19
Citation
Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae
Metelev, M., Arseniev, A., Bushin, L.B., Kuznedelov, K., Artamonova, T., Kondratenko, R., Khodorkovskii, M., Seyedsayamdost, M.R., Severinov, K.
ACS Chem. Biol. (2017), 12, 814-824, PubMed 28106375 , DOI 10.1021/acschembio.6b01154 ,
Related entities 1. Acinetodin, : 1 entities Detail
Experiments performed 6 experiments Detail
NMR combined restraints 3 contents Detail
Keywords ANTIMICROBIAL PROTEIN, STRUCTURE FROM CYANA 2.1, lasso peptide RNAP inhibitor