BMRB: 30238

Solution structure of chemically synthesized antilisterial Pediocin PA-1 analog.

Authors

Bedard, F., Hammami, R., Zirah, S., Rebuffat, S., Fliss, I., Biron, E.

Assembly

Bacteriocin pediocin PA-1

Entity

1. Bacteriocin pediocin PA-1 (polymer), 44 monomers, 4610.113 Da Detail

KYYGNGVTCG KHSCSVDWGK ATTCIINNGA LAWATGGHQG NHKC

Formula weight

4610.113 Da

Source organism

Pediococcus acidilactici

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 86.4 %, Completeness: 82.7 %, Completeness (bb): 85.4 % Detail

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Polymer type: polypeptide(L)

	Total	1H
All	82.7 % (196 of 237)	82.7 % (196 of 237)
Backbone	85.4 % (82 of 96)	85.4 % (82 of 96)
Sidechain	80.9 % (114 of 141)	80.9 % (114 of 141)
Aromatic	100.0 % (26 of 26)	100.0 % (26 of 26)
Methyl	72.2 % (13 of 18)	72.2 % (13 of 18)

1. entity 1

KYYGNGVTCG KHSCSVDWGK ATTCIINNGA LAWATGGHQG NHKC

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Sample

Solvent system trifluoroethanol/water, Pressure 1 atm, Temperature 313 (±0.1) K, pH 2.8 (±0.2), Details 3.33 mg/mL NA- Pediocin PA-1 M31L, trifluoroethanol/water

#	Name	Isotope labeling	Type	Concentration
1	Pediocin PA-1 M31L	natural abundance		3.33 (±0.01) mg/mL

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Release date

2017-03-14

Citation

Synthesis, antimicrobial activity and conformational analysis of the class IIa bacteriocin pediocin PA-1 and analogs thereof
Bedard, F., Hammami, R., Zirah, S., Rebuffat, S., Fliss, I., Biron, E.
Sci. Rep. (2018), 8, 9029-9029, PubMed 29899567 , DOI 10.1038/s41598-018-27225-3 , Abstract

Related entities 1. Bacteriocin pediocin PA-1, : 1 : 2 : 18 entities Detail

Experiments performed 2 experiments Detail