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Solution NMR structure of the BRCT domain of S. cerevisiae Rev1
Authors
Xu, C., Cui, G., Botuyan, M.V., Mer, G.
Assembly
DNA repair protein REV1 (E.C.2.7.7.-)
Entity
1. DNA repair protein REV1 (E.C.2.7.7.-) (polymer, Thiol state: all free), 93 monomers, 10685.41 Da Detail

GHMSSKIFKN CVIYINGYTK PGRLQLHEMI VLHGGKFLHY LSSKKTVTHI VASNLPLKKR IEFANYKVVS PDWIVDSVKE ARLLPWQNYS LTS


Formula weight
10685.41 Da
Source organism
Saccharomyces cerevisiae S288C
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 97.8 %, Completeness: 84.5 %, Completeness (bb): 93.6 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All84.5 % (970 of 1148)85.6 % (511 of 597)80.8 % (366 of 453)94.9 % (93 of 98)
Backbone93.6 % (515 of 550)92.5 % (173 of 187)94.2 % (258 of 274)94.4 % (84 of 89)
Sidechain79.0 % (542 of 686)82.4 % (338 of 410)73.0 % (195 of 267)100.0 % (9 of 9)
Aromatic35.1 % (40 of 114)63.2 % (36 of 57) 3.6 % (2 of 55)100.0 % (2 of 2)
Methyl93.9 % (107 of 114)94.7 % (54 of 57)93.0 % (53 of 57)

1. entity 1

GHMSSKIFKN CVIYINGYTK PGRLQLHEMI VLHGGKFLHY LSSKKTVTHI VASNLPLKKR IEFANYKVVS PDWIVDSVKE ARLLPWQNYS LTS

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1 mM [U-100% 15N] Rev1-BRCT, 50 mM Sodium phosphate buffer, 50 mM NaCl, 90% H2O/10% D2O.


#NameIsotope labelingTypeConcentration
1NaClnatural abundance50 mM
2Rev1-BRCT[U-100% 15N]1 mM
3Sodium phosphate buffernatural abundance50 mM
Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1 mM [U-100% 13C; U-100% 15N] Rev1-BRCT, 50 mM sodium phosphate buffer, 50 mM NaCl, 90% H2O/10% D2O.


#NameIsotope labelingTypeConcentration
4NaClnatural abundance50 mM
5Rev1-BRCT[U-100% 13C; U-100% 15N]1 mM
6sodium phosphate buffernatural abundance50 mM

LACS Plot; CA
Referencing offset: 2.26 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: 2.26 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.17 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 2.76 ppm, Outliers: 2 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 5VX7, Strand ID: A Detail


Release date
2017-06-01
Citation
NMR mapping of PCNA interaction with translesion synthesis DNA polymerase Rev1 mediated by Rev1-BRCT domain
Xu, C., Cui, G., Botuyan, M.V., Mer, G.
J. Mol. Biol. (2013), 425, 3091-3105, PubMed 23747975 , DOI 10.1016/j.jmb.2013.05.029 ,
Related entities 1. DNA repair protein REV1 (E.C.2.7.7.-), : 1 : 1 : 4 : 138 entities Detail
Interaction partners 1. DNA repair protein REV1 (E.C.2.7.7.-), : 10 interactors Detail
Experiments performed 16 experiments Detail
nullKeywords BRCT domain, DNA damage response, DNA replication, Protein binding, TRANSFERASE, Translesion DNA synthesis