Abl1b Regulatory Module 'Activating' conformation
MGQQPGKVLG DQRRPSLPAL HFIKGAGKRE SSRHGGPHCN VFVEHEALQR PVASDFEPQG LSEAARWNSK ENLLAGPSEN DPNLFVALYD FVASGDNTLS ITKGEKLRVL GYNHNGEWAE AQTKNGQGWV PSNYITPVNS LEKHSWYHGP VSRNAAEYLL SSGINGSFLV RESESSPGQR SISLRYEGRV YHYRINTASD GKLYVSSESR FNTLAELVHH HSTVADGLIT TLHYPAPKRN KPTVYGVSPN YDKWE
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 74.5 % (2175 of 2921) | 72.4 % (1101 of 1521) | 77.5 % (877 of 1131) | 73.2 % (197 of 269) |
Backbone | 79.2 % (1187 of 1498) | 78.7 % (407 of 517) | 79.2 % (588 of 742) | 80.3 % (192 of 239) |
Sidechain | 69.9 % (1157 of 1655) | 68.4 % (687 of 1004) | 74.9 % (465 of 621) | 16.7 % (5 of 30) |
Aromatic | 68.6 % (188 of 274) | 68.6 % (94 of 137) | 68.9 % (91 of 132) | 60.0 % (3 of 5) |
Methyl | 79.8 % (190 of 238) | 78.2 % (93 of 119) | 81.5 % (97 of 119) |
1. Tyrosine-protein kinase ABL1
MGQQPGKVLG DQRRPSLPAL HFIKGAGKRE SSRHGGPHCN VFVEHEALQR PVASDFEPQG LSEAARWNSK ENLLAGPSEN DPNLFVALYD FVASGDNTLS ITKGEKLRVL GYNHNGEWAE AQTKNGQGWV PSNYITPVNS LEKHSWYHGP VSRNAAEYLL SSGINGSFLV RESESSPGQR SISLRYEGRV YHYRINTASD GKLYVSSESR FNTLAELVHH HSTVADGLIT TLHYPAPKRN KPTVYGVSPN YDKWESolvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 700 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 700 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 700 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 700 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7, Details 0.3 mM [U-99% 13C; U-99% 15N] Abl1b, 20 mM potassium phosphate, 100 mM potassium chloride, 5 mM beta-mercaptoethanol, 0.05 % sodium azide, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Abl1b | [U-99% 13C; U-99% 15N] | 0.3 mM | |
2 | beta-mercaptoethanol | natural abundance | 5 mM | |
3 | potassium chloride | natural abundance | 100 mM | |
4 | potassium phosphate | natural abundance | 20 mM | |
5 | sodium azide | natural abundance | 0.05 % |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_30332_6amw.nef |
Input source #2: Coordindates | 6amw.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MGQQPGKVLGDQRRPSLPALHFIKGAGKRESSRHGGPHCNVFVEHEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLS |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MGQQPGKVLGDQRRPSLPALHFIKGAGKRESSRHGGPHCNVFVEHEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLS -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD -------210-------220-------230-------240-------250----- GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWE ||||||||||||||||||||||||||||||||||||||||||||||||||||||| GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWE
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 255 | 0 | 0 | 100.0 |
Content subtype: combined_30332_6amw.nef
Assigned chemical shifts
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MGQQPGKVLGDQRRPSLPALHFIKGAGKRESSRHGGPHCNVFVEHEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLS |||||||||||||||||||||||||||||||||||| |||||||||||||||||| MGQQPGKVLGDQRRPSLPALHFIKGAGKRESSRHGG..............................................NLFVALYDFVASGDNTLS --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 -------210-------220-------230-------240-------250----- GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWE ||||||||||||||||||||||||||||||||||||||| GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKR -------210-------220-------230---------
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 1521 | 1065 | 70.0 |
13C chemical shifts | 1131 | 834 | 73.7 |
15N chemical shifts | 284 | 180 | 63.4 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 517 | 387 | 74.9 |
13C chemical shifts | 510 | 382 | 74.9 |
15N chemical shifts | 239 | 177 | 74.1 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 1004 | 678 | 67.5 |
13C chemical shifts | 621 | 452 | 72.8 |
15N chemical shifts | 45 | 3 | 6.7 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 120 | 96 | 80.0 |
13C chemical shifts | 120 | 96 | 80.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 137 | 94 | 68.6 |
13C chemical shifts | 132 | 91 | 68.9 |
15N chemical shifts | 5 | 3 | 60.0 |
Distance restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MGQQPGKVLGDQRRPSLPALHFIKGAGKRESSRHGGPHCNVFVEHEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLS ||||||||||||||||||||||| |||| || | |||||||||||||||||| .GQQPGKVLGDQRRPSLPALHFIK.AGKR.SS.H................................................NLFVALYDFVASGDNTLS --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ITKGEKLRVLGYN.NGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 -------210-------220-------230-------240-------250----- GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWE ||||||||||||||||||||||||||||||||||||||| GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKR -------210-------220-------230---------
Dihedral angle restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MGQQPGKVLGDQRRPSLPALHFIKGAGKRESSRHGGPHCNVFVEHEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLS |||||||||||| | ||| | || |||||||||||||||||| ............RRPSLPALHFIK.......................L.......FEP..L...........LL........NLFVALYDFVASGDNTLS --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ITKGEKLRVLGYNHNGEWAEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD -------110-------120-------130-------140-------150-------160-------170-------180-------190-------200 -------210-------220-------230-------240-------250----- GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWE |||||||||||||||||||||||||||||||||||||||| GKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRN -------210-------220-------230-------240