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Solution structure of de novo macrocycle design9.1
Authors
Shortridge, M.D., Hosseinzadeh, P., Pardo-Avila, F., Varani, G., Baker, D.
Assembly
(DPR)PY(DHI)PKDL(DGN)
Entity
1. (DPR)PY(DHI)PKDL(DGN) (polymer, Thiol state: not present), 9 monomers, 1095.226 Da Detail

XPYXPKDLX


Formula weight
1095.226 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 66.7 %, Completeness: 90.7 %, Completeness (bb): 100.0 % Detail

Polymer type: polypeptide(L)

Total1H
All90.7 % (39 of 43)90.7 % (39 of 43)
Backbone100.0 % (10 of 10)100.0 % (10 of 10)
Sidechain87.9 % (29 of 33)87.9 % (29 of 33)
Aromatic100.0 % (4 of 4)100.0 % (4 of 4)
Methyl100.0 % (2 of 2)100.0 % (2 of 2)

1. entity 1

XPYXPKDLX

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 Torr, Temperature 278 K, pH 5.5, Details 5 mg/mL Design 9.1, 5 % [U-2H] glycerol, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1Design 9.1natural abundance5 mg/mL
2glycerol[U-2H]5 %

Protein Blocks Logo
Calculated from 20 models in PDB: 6BEO, Strand ID: A Detail


Release date
2017-12-20
Citation
Comprehensive computational design of ordered peptide macrocycles
Hosseinzadeh, P., Bhardwaj, G., Mulligan, V.K., Shortridge, M.D., Craven, T.W., Pardo-Avila, F., Rettie, S.A., Kim, D.E., Silva, D.A., Ibrahim, Y.M., Webb, I.K., Cort, J.R., Adkins, J.N., Varani, G., Baker, D.
Science (2017), 358, 1461-1466, PubMed 29242347 , DOI 10.1126/science.aap7577 ,
Experiments performed 2 experiments Detail
NMR combined restraints 3 contents Detail
Keywords DE NOVO PROTEIN, de novo, macrocycle