Solution structure of a phosphate-loop protein
MRVIVVIVGP SGAGKTTLDE LARKAKEEVP DAEIRTVTTK EDAKRVAEEA ERRNADIVVI VGPSGSGKST LAKIVKKIIA RAGAKTIEVT TEEELRKAVA KARGSWSLEH HHHHH
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 90.3 % (1162 of 1287) | 87.9 % (586 of 667) | 92.5 % (468 of 506) | 94.7 % (108 of 114) |
Backbone | 94.4 % (646 of 684) | 95.3 % (224 of 235) | 93.8 % (316 of 337) | 94.6 % (106 of 112) |
Sidechain | 87.0 % (618 of 710) | 83.8 % (362 of 432) | 92.0 % (254 of 276) | 100.0 % (2 of 2) |
Aromatic | 61.1 % (22 of 36) | 61.1 % (11 of 18) | 58.8 % (10 of 17) | 100.0 % (1 of 1) |
Methyl | 94.9 % (148 of 156) | 94.9 % (74 of 78) | 94.9 % (74 of 78) |
1. entity 1
MRVIVVIVGP SGAGKTTLDE LARKAKEEVP DAEIRTVTTK EDAKRVAEEA ERRNADIVVI VGPSGSGKST LAKIVKKIIA RAGAKTIEVT TEEELRKAVA KARGSWSLEH HHHHHSolvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 1 mM [U-100% 15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | protein | [U-100% 15N] | 1 mM | |
5 | sodium phosphate | natural abundance | 10 mM | |
6 | sodium chloride | natural abundance | 50 mM |
Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 100% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
7 | protein | [U-13C; U-15N] | 2 mM | |
8 | sodium phosphate | natural abundance | 10 mM | |
9 | sodium chloride | natural abundance | 50 mM |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Bruker Avance - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 1 mM [U-100% 15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | protein | [U-100% 15N] | 1 mM | |
5 | sodium phosphate | natural abundance | 10 mM | |
6 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 100% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
7 | protein | [U-13C; U-15N] | 2 mM | |
8 | sodium phosphate | natural abundance | 10 mM | |
9 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 600 MHz
State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 100% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
7 | protein | [U-13C; U-15N] | 2 mM | |
8 | sodium phosphate | natural abundance | 10 mM | |
9 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 800 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 1 mM [U-100% 15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
4 | protein | [U-100% 15N] | 1 mM | |
5 | sodium phosphate | natural abundance | 10 mM | |
6 | sodium chloride | natural abundance | 50 mM |
Bruker Avance - 800 MHz
State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.0, Details 2.0 mM [U-13C; U-15N] protein, 10 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | protein | [U-13C; U-15N] | 2.0 mM | |
2 | sodium phosphate | natural abundance | 10 mM | |
3 | sodium chloride | natural abundance | 50 mM |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints, Dihedral angle restraints | combined_30394_6c2u.nef |
Input source #2: Coordindates | 6c2u.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTTEEELRKAVA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTTEEELRKAVA -------110----- KARGSWSLEHHHHHH ||||||||||||||| KARGSWSLEHHHHHH
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 115 | 0 | 0 | 100.0 |
Content subtype: combined_30394_6c2u.nef
Assigned chemical shifts
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTTEEELRKAVA ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTT...LR.AVA -------110----- KARGSWSLEHHHHHH ||||||||||||||| KARGSWSLEHHHHHH
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 667 | 551 | 82.6 |
13C chemical shifts | 506 | 461 | 91.1 |
15N chemical shifts | 123 | 113 | 91.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 235 | 219 | 93.2 |
13C chemical shifts | 230 | 210 | 91.3 |
15N chemical shifts | 112 | 104 | 92.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 432 | 332 | 76.9 |
13C chemical shifts | 276 | 251 | 90.9 |
15N chemical shifts | 11 | 9 | 81.8 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 79 | 75 | 94.9 |
13C chemical shifts | 79 | 75 | 94.9 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
1H chemical shifts | 18 | 11 | 61.1 |
13C chemical shifts | 17 | 10 | 58.8 |
15N chemical shifts | 1 | 1 | 100.0 |
Distance restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTTEEELRKAVA ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTT...LR.AVA -------110----- KARGSWSLEHHHHHH |||||||||||| || KARGSWSLEHHH.HH
Dihedral angle restraints
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 MRVIVVIVGPSGAGKTTLDELARKAKEEVPDAEIRTVTTKEDAKRVAEEAERRNADIVVIVGPSGSGKSTLAKIVKKIIARAGAKTIEVTTEEELRKAVA |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||||||| .RVIVVIVG.....KTTLDELARKAKEEV..AEIRTVTTKEDAKRVAEEAERR..DIVVIVG......STLAKIVKKIIARA.AKTIEV....ELRKAVA --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 -------110----- KARGSWSLEHHHHHH ||||||||| KARGSWSLE ---------