NMR-based structure of the FHA-2 domain from Mycobacterium tuberculosis ABC transporter Rv1747
GHMWNLATSM MKILRPGRLT GELPPGAVRI GRANDNDIVI PEVLASRHHA TLVPTPGGTE IRDNRSINGT FVNGARVDAA LLHDGDVVTI GNIDLVFADG TLARREEN
Polymer type: polypeptide(L)
Total | 1H | 13C | 15N | |
---|---|---|---|---|
All | 90.1 % (1061 of 1178) | 87.0 % (527 of 606) | 92.2 % (425 of 461) | 98.2 % (109 of 111) |
Backbone | 96.1 % (611 of 636) | 94.1 % (209 of 222) | 96.5 % (301 of 312) | 99.0 % (101 of 102) |
Sidechain | 85.4 % (545 of 638) | 82.8 % (318 of 384) | 89.4 % (219 of 245) | 88.9 % (8 of 9) |
Aromatic | 70.8 % (34 of 48) | 66.7 % (16 of 24) | 78.3 % (18 of 23) | 0.0 % (0 of 1) |
Methyl | 92.4 % (133 of 144) | 93.1 % (67 of 72) | 91.7 % (66 of 72) |
1. entity 1
GHMWNLATSM MKILRPGRLT GELPPGAVRI GRANDNDIVI PEVLASRHHA TLVPTPGGTE IRDNRSINGT FVNGARVDAA LLHDGDVVTI GNIDLVFADG TLARREENSolvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Atom type | Mol. common name | Atom group | Value | Ref. method | Ref. type | Shift ratio |
---|---|---|---|---|---|---|
13C | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.2514495 |
1H | DSS | methyl protons | 0.0 ppm | internal | direct | 1.0 |
15N | DSS | methyl protons | 0.0 ppm | internal | indirect | 0.1013291 |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Bruker AvanceIII - 850 MHz
State isotropic, Solvent system water, Pressure 1 atm, Temperature 298 K, pH 6, Details 300 uM [U-100% 13C; U-100% 15N] Rv1747 FHA-2, 20 mM Sodium Phosphate, 100 mM NaCl, water
# | Name | Isotope labeling | Type | Concentration |
---|---|---|---|---|
1 | Rv1747 FHA-2 | [U-100% 13C; U-100% 15N] | 300 uM | |
2 | Sodium Phosphate | natural abundance | 20 mM | |
3 | NaCl | natural abundance | 100 mM |
Properties
Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints | combined_30399_6cah.nef |
Input source #2: Coordindates | 6cah.cif |
Diamagnetism of the molecular assembly | True (excluding Oxygen atoms) |
Whether the assembly has a disulfide bond | None |
Whether the assembly has a other bond | None |
Whether the assembly contains a cyclic polymer | None |
Overall data processing status | Warning |
Disulfide bonds
NoneOther bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)
NoneNon-standard residues
NoneSequence alignments
-----210-------220-------230-------240-------250-------260-------270-------280-------290-------300-- GHMWNLATSMMKILRPGRLTGELPPGAVRIGRANDNDIVIPEVLASRHHATLVPTPGGTEIRDNRSINGTFVNGARVDAALLHDGDVVTIGNIDLVFADG |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GHMWNLATSMMKILRPGRLTGELPPGAVRIGRANDNDIVIPEVLASRHHATLVPTPGGTEIRDNRSINGTFVNGARVDAALLHDGDVVTIGNIDLVFADG --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100 -----310 TLARREEN |||||||| TLARREEN --------
Chain assignments
Entity_assembly_ID (NMR) | Auth_asym_ID (model) | Length | Unmapped | Conflict | Sequence coverage (%) |
---|---|---|---|---|---|
A | A | 108 | 0 | 0 | 100.0 |
Content subtype: combined_30399_6cah.nef
Assigned chemical shifts
-----210-------220-------230-------240-------250-------260-------270-------280-------290-------300-- GHMWNLATSMMKILRPGRLTGELPPGAVRIGRANDNDIVIPEVLASRHHATLVPTPGGTEIRDNRSINGTFVNGARVDAALLHDGDVVTIGNIDLVFADG ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GHMWNLATSMMKILRPGRLTGEL.PGAVRIGRANDNDIVIPEVLASRHHATLVPTPGGTEIRDNRSINGTFVNGARVDAALLHDGDVVTIGNIDLVFADG -----310 TLARREEN |||||||| TLARREEN
Comp_index_ID | Comp_ID | Atom_ID | CS value (ppm) |
---|---|---|---|
204 | HIS | HE2 | 8.222 |
250 | HIS | HE2 | 8.218 |
251 | HIS | HE2 | 7.908 |
251 | HIS | NE2 | 169.523 |
285 | HIS | HE2 | 8.494 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 461 | 417 | 90.5 |
1H chemical shifts | 606 | 502 | 82.8 |
15N chemical shifts | 121 | 109 | 90.1 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 216 | 204 | 94.4 |
1H chemical shifts | 222 | 204 | 91.9 |
15N chemical shifts | 102 | 101 | 99.0 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 245 | 213 | 86.9 |
1H chemical shifts | 384 | 298 | 77.6 |
15N chemical shifts | 19 | 8 | 42.1 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 75 | 64 | 85.3 |
1H chemical shifts | 75 | 64 | 85.3 |
Atom group | # of target shifts | # of assigned shifts | Completeness (%) |
---|---|---|---|
13C chemical shifts | 23 | 18 | 78.3 |
1H chemical shifts | 24 | 15 | 62.5 |
15N chemical shifts | 1 | 0 | 0.0 |
Distance restraints
-----210-------220-------230-------240-------250-------260-------270-------280-------290-------300-- GHMWNLATSMMKILRPGRLTGELPPGAVRIGRANDNDIVIPEVLASRHHATLVPTPGGTEIRDNRSINGTFVNGARVDAALLHDGDVVTIGNIDLVFADG |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ...............PGRLTGEL.PGAVRIGRANDNDIVIPEVLASRHHATLVPTPGGTEIRDNRSINGTFVNGARVDAALLHDGDVVTIGNIDLVFADG -----310 TLARREEN |||||||| TLARREEN