BMRBj - BMREntryMaster

Found 1 Document (0.697 seconds)

BMRB: 30515

6MI5

NMR solution structure of lanmodulin (LanM) complexed with yttrium(III) ions

Authors

Cook, E.C., Featherson, E.R., Showalter, S.A., Cotruvo Jr, J.A.

Assembly

Lanmodulin

Entity

1. Lanmodulin, entity 1 (polymer, Thiol state: not present), 117 monomers, 12508.60 Da Detail

PTTTTKVDIA AFDPDKDGTI DLKEALAAGS AAFDKLDPDK DGTLDAKELK GRVSEADLKK LDPDNDGTLD KKEYLAAVEA QFKAANPDND GTIDARELAS PAGSALVNLI RHHHHHH

2. Lanmodulin, entity YT3 (non-polymer), 88.906 × 4 Da

Total weight

12864.224 Da

Max. entity weight

12508.6 Da

Source organism

Methylorubrum extorquens AM1

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 94.0 %, Completeness: 72.6 %, Completeness (bb): 78.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	72.6 % (923 of 1271)	76.0 % (498 of 655)	64.4 % (322 of 500)	88.8 % (103 of 116)
Backbone	78.0 % (538 of 690)	89.8 % (211 of 235)	65.4 % (225 of 344)	91.9 % (102 of 111)
Sidechain	70.3 % (486 of 691)	68.3 % (287 of 420)	74.4 % (198 of 266)	20.0 % (1 of 5)
Aromatic	11.3 % (7 of 62)	19.4 % (6 of 31)	3.2 % (1 of 31)
Methyl	95.5 % (126 of 132)	97.0 % (64 of 66)	93.9 % (62 of 66)

1. entity 1

PTTTTKVDIA AFDPDKDGTI DLKEALAAGS AAFDKLDPDK DGTLDAKELK GRVSEADLKK LDPDNDGTLD KKEYLAAVEA QFKAANPDND GTIDARELAS PAGSALVNLI RHHHHHH

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
7	Lanmodulin	[U-99% 13C; U-99% 15N]	1.26 mM
8	MOPS	natural abundance	20 mM
9	KCl	natural abundance	20 mM
10	acetate	natural abundance	5 mM
11	EGTA	natural abundance	1 mM
12	YCl3	natural abundance	5 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 3.11 ppm, Outliers: 4 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 3.11 ppm, Outliers: 4 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 2 Detail

Release date

2018-10-28

Citation

Structural Basis for Rare Earth Element Recognition by Methylobacterium extorquens Lanmodulin
Cook, E.C., Featherston, E.R., Showalter, S.A., Cotruvo Jr, J.A.
Biochemistry (2018), 58, 120-125, PubMed 30352145 , DOI 10.1021/acs.biochem.8b01019 , Abstract

Related entities 1. Lanmodulin, entity 1, : 1 : 1 : 26 entities Detail

Experiments performed 10 experiments Detail

1 3D 1H-13C NOESY aliphatic

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
7	Lanmodulin	[U-99% 13C; U-99% 15N]	1.26 mM
8	MOPS	natural abundance	20 mM
9	KCl	natural abundance	20 mM
10	acetate	natural abundance	5 mM
11	EGTA	natural abundance	1 mM
12	YCl3	natural abundance	5 mM

2 3D 1H-15N NOESY

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

3 3D HNCACB

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

4 3D CBCA(CO)NH

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

5 3D HNCO

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

6 3D HN(CA)CO

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

7 3D HCCH-TOCSY

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

8 3D H(CCO)NH

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
7	Lanmodulin	[U-99% 13C; U-99% 15N]	1.26 mM
8	MOPS	natural abundance	20 mM
9	KCl	natural abundance	20 mM
10	acetate	natural abundance	5 mM
11	EGTA	natural abundance	1 mM
12	YCl3	natural abundance	5 mM

9 2D 1H-15N HSQC

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Lanmodulin	[U-99% 13C; U-99% 15N]	1.14 mM
2	MOPS	natural abundance	20 mM
3	KCl	natural abundance	20 mM
4	acetate	natural abundance	5 mM
5	EGTA	natural abundance	1 mM
6	YCl3	natural abundance	5 mM

10 2D 1H-13C HSQC

Instrument

Bruker AvanceIII - 850 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details 1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
7	Lanmodulin	[U-99% 13C; U-99% 15N]	1.26 mM
8	MOPS	natural abundance	20 mM
9	KCl	natural abundance	20 mM
10	acetate	natural abundance	5 mM
11	EGTA	natural abundance	1 mM
12	YCl3	natural abundance	5 mM

nullKeywords EF-hand, METAL BINDING PROTEIN, lanthanide, methylotroph, periplasm

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Found 1 Document (0.697 seconds)

BMRB: 30515

Sample #1

Sample #2

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. Lanmodulin, entity 1, : 1 : 1 : 26 entities Detail

Experiments performed 10 experiments Detail

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