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A consensus human beta defensin
Authors
Amero, C., Villegas-Moreno, J., Rodriguez, A.
Assembly
Human beta-defensin
Entity
1. Human beta-defensin (polymer, Thiol state: all disulfide bound), 32 monomers, 3732.435 Da Detail

KKCWNGGRCR KKCKENEKPI GYCRNGKKCC VN


Formula weight
3732.435 Da
Entity Connection
disulfide 3 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing1:CYS3:SG1:CYS29:SG
2disulfidesing1:CYS9:SG1:CYS23:SG
3disulfidesing1:CYS13:SG1:CYS30:SG

Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 96.9 %, Completeness: 83.2 %, Completeness (bb): 80.0 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All83.2 % (326 of 392)91.7 % (198 of 216)67.9 % (95 of 140)91.7 % (33 of 36)
Backbone80.0 % (152 of 190)97.0 % (65 of 67)64.1 % (59 of 92)90.3 % (28 of 31)
Sidechain87.4 % (201 of 230)89.3 % (133 of 149)82.9 % (63 of 76)100.0 % (5 of 5)
Aromatic50.0 % (10 of 20)90.0 % (9 of 10) 0.0 % (0 of 9)100.0 % (1 of 1)
Methyl100.0 % (8 of 8)100.0 % (4 of 4)100.0 % (4 of 4)

1. entity 1

KKCWNGGRCR KKCKENEKPI GYCRNGKKCC VN

Sample

Solvent system 93% H2O/7% D2O, Pressure 1 atm, Temperature 298 K, pH 5.6, Details 1.3 mg/mL peptide, 93% H2O/7% D2O


#NameIsotope labelingTypeConcentration
1peptidenatural abundance1.3 mg/mL

Protein Blocks Logo
Calculated from 20 models in PDB: 6MJV, Strand ID: A Detail


Release date
2018-10-09
Citation
Antimicrobial activity and structure of a consensus human β-defensin and its comparison to a novel putative hBD10
Rodriguez, A., Pedersen, M.O., Villegas, E., Rivas-Santiago, B., Villegas-Moreno, J., Amero, C., Norton, R.S., Corzo, G.
Proteins (2019), 88, 175-186, PubMed 31325337 , DOI 10.1002/prot.25785 ,
Related entities 1. Human beta-defensin, : 1 : 116 entities Detail
Experiments performed 6 experiments Detail
Chemical shift validation 3 contents Detail
Keywords ANTIMICROBIAL PROTEIN, Human beta-defensin