BMRBj - BMREntryMaster

Found 1 Document (2.437 seconds)

BMRB: 30528

6MSD

Shuttle proteins complex

Authors

Chen, X., Walters, K.J.

Assembly

26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2

Entity

1. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 1 (polymer, Thiol state: not present), 111 monomers, 11819.82 Da Detail

MLGLGASDFE FGVDPSADPE LALALRVSME EQRQRQEEEA RRAAAASAAE AGIATTGTED SDDALLKMTI SQQEFGRTGL PDLSSMTEEE QIAYAMQMSL QGAEFGQAES A

2. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 2 (polymer, Thiol state: not present), 78 monomers, 8749.065 × 2 Da Detail

APAEPKIIKV TVKTPKEKEE FAVPENSSVQ QFKEAISKRF KSQTDQLVLI FAGKILKDQD TLIQHGIHDG LTVHLVIK

Total weight

29317.951 Da

Max. entity weight

11819.82 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 89.7 %, Completeness (bb): 86.5 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	89.7 % (1916 of 2135)	98.5 % (1093 of 1110)	75.6 % (625 of 827)	100.0 % (198 of 198)
Backbone	86.5 % (969 of 1120)	100.0 % (383 of 383)	72.8 % (404 of 555)	100.0 % (182 of 182)
Sidechain	94.3 % (1124 of 1192)	97.7 % (710 of 727)	88.6 % (398 of 449)	100.0 % (16 of 16)
Aromatic	50.0 % (50 of 100)	90.0 % (45 of 50)	10.0 % (5 of 50)
Methyl	100.0 % (214 of 214)	100.0 % (107 of 107)	100.0 % (107 of 107)

1. entity 1

MLGLGASDFE FGVDPSADPE LALALRVSME EQRQRQEEEA RRAAAASAAE AGIATTGTED SDDALLKMTI SQQEFGRTGL PDLSSMTEEE QIAYAMQMSL QGAEFGQAES A

2. entity 2

APAEPKIIKV TVKTPKEKEE FAVPENSSVQ QFKEAISKRF KSQTDQLVLI FAGKILKDQD TLIQHGIHDG LTVHLVIK

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 15N] hRpn10 196-306, 1.38 mM UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	hRpn10 196-306	[U-100% 15N]	0.6 mM
2	UBQLN2 UBL	natural abundance	1.38 mM
3	NaPO4	natural abundance	20 mM
4	sodium chloride	natural abundance	50 mM
5	DTT	natural abundance	2 mM
6	sodium azide	natural abundance	0.1 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C] hRpn10 196-306, 1.38 mM UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
7	hRpn10 196-306	[U-100% 13C]	0.6 mM
8	UBQLN2 UBL	natural abundance	1.38 mM
9	NaPO4	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	DTT	natural abundance	2 mM
12	sodium azide	natural abundance	0.1 %

Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 15N; U-100% 2H] hRpn10 196-306, 1.38 mM UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
13	hRpn10 196-306	[U-100% 15N; U-100% 2H]	0.6 mM
14	UBQLN2 UBL	natural abundance	1.38 mM
15	NaPO4	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	DTT	natural abundance	2 mM
18	sodium azide	natural abundance	0.1 %

Sample #4

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C; U-100% 15N] UBQLN2 UBL, 0.6 mM hRpn10 196-306, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
19	hRpn10 196-306	natural abundance	0.6 mM
20	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
21	NaPO4	natural abundance	20 mM
22	sodium chloride	natural abundance	50 mM
23	DTT	natural abundance	2 mM
24	sodium azide	natural abundance	0.1 %

Sample #5

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C; U-100% 15N] UBQLN2 UBL, 0.6 mM hRpn10 196-306, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

Sample #6

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C; U-100% 15N] UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
31	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
32	NaPO4	natural abundance	20 mM
33	sodium chloride	natural abundance	50 mM
34	DTT	natural abundance	2 mM
35	sodium azide	natural abundance	0.1 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl carbons	na	indirect	2.514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.16 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl carbons	na	indirect	2.514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.16 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl carbons	na	indirect	2.514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.07 ppm, Outliers: 4 Detail

Protein Blocks Logo

Calculated from 10 models in PDB: 6MUN, Strand ID: A, B, C Detail

Release date

2018-10-25

Citation

Structure of hRpn10 Bound to UBQLN2 UBL Illustrates Basis for Complementarity between Shuttle Factors and Substrates at the Proteasome
Chen, X., Ebelle, D.L., Wright, B.J., Sridharan, V., Hooper, E., Walters, K.J.
J. Mol. Biol. (2019), 431, 939-955, PubMed 30664872 , DOI 10.1016/j.jmb.2019.01.021 , Abstract

Related entities 1. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 1, : 1 : 23 : 4 : 13 entities Detail

Related entities 2. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 2, : 2 : 97 entities Detail

Interaction partners 2. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 2, : 20 interactors Detail

More details for 20 interactors identified by 12 citations

Experiments performed 18 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker Avance - 850 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 15N] hRpn10 196-306, 1.38 mM UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	hRpn10 196-306	[U-100% 15N]	0.6 mM
2	UBQLN2 UBL	natural abundance	1.38 mM
3	NaPO4	natural abundance	20 mM
4	sodium chloride	natural abundance	50 mM
5	DTT	natural abundance	2 mM
6	sodium azide	natural abundance	0.1 %

2 3D 1H-15N NOESY

Instrument

Bruker Avance - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
1	hRpn10 196-306	[U-100% 15N]	0.6 mM
2	UBQLN2 UBL	natural abundance	1.38 mM
3	NaPO4	natural abundance	20 mM
4	sodium chloride	natural abundance	50 mM
5	DTT	natural abundance	2 mM
6	sodium azide	natural abundance	0.1 %

3 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 850 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C] hRpn10 196-306, 1.38 mM UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
7	hRpn10 196-306	[U-100% 13C]	0.6 mM
8	UBQLN2 UBL	natural abundance	1.38 mM
9	NaPO4	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	DTT	natural abundance	2 mM
12	sodium azide	natural abundance	0.1 %

4 3D 1H-13C NOESY aliphatic

Instrument

Bruker Avance - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
7	hRpn10 196-306	[U-100% 13C]	0.6 mM
8	UBQLN2 UBL	natural abundance	1.38 mM
9	NaPO4	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	DTT	natural abundance	2 mM
12	sodium azide	natural abundance	0.1 %

5 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
7	hRpn10 196-306	[U-100% 13C]	0.6 mM
8	UBQLN2 UBL	natural abundance	1.38 mM
9	NaPO4	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	DTT	natural abundance	2 mM
12	sodium azide	natural abundance	0.1 %

6 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 850 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C; U-100% 15N] UBQLN2 UBL, 0.6 mM hRpn10 196-306, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

7 3D 1H-15N NOESY

Instrument

Bruker Avance - 700 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C; U-100% 15N] UBQLN2 UBL, 0.6 mM hRpn10 196-306, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
19	hRpn10 196-306	natural abundance	0.6 mM
20	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
21	NaPO4	natural abundance	20 mM
22	sodium chloride	natural abundance	50 mM
23	DTT	natural abundance	2 mM
24	sodium azide	natural abundance	0.1 %

8 2D 1H-15N HSQC

Instrument

Bruker Avance - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
19	hRpn10 196-306	natural abundance	0.6 mM
20	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
21	NaPO4	natural abundance	20 mM
22	sodium chloride	natural abundance	50 mM
23	DTT	natural abundance	2 mM
24	sodium azide	natural abundance	0.1 %

9 3D 1H-15N NOESY

Instrument

Bruker Avance - 850 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 15N; U-100% 2H] hRpn10 196-306, 1.38 mM UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
13	hRpn10 196-306	[U-100% 15N; U-100% 2H]	0.6 mM
14	UBQLN2 UBL	natural abundance	1.38 mM
15	NaPO4	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	DTT	natural abundance	2 mM
18	sodium azide	natural abundance	0.1 %

10 2D 1H-15N HSQC

Instrument

Bruker Avance - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
13	hRpn10 196-306	[U-100% 15N; U-100% 2H]	0.6 mM
14	UBQLN2 UBL	natural abundance	1.38 mM
15	NaPO4	natural abundance	20 mM
16	sodium chloride	natural abundance	50 mM
17	DTT	natural abundance	2 mM
18	sodium azide	natural abundance	0.1 %

11 3D 1H-13C half-filter NOESY

Instrument

Bruker Avance - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
7	hRpn10 196-306	[U-100% 13C]	0.6 mM
8	UBQLN2 UBL	natural abundance	1.38 mM
9	NaPO4	natural abundance	20 mM
10	sodium chloride	natural abundance	50 mM
11	DTT	natural abundance	2 mM
12	sodium azide	natural abundance	0.1 %

12 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 800 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 0.6 mM [U-100% 13C; U-100% 15N] UBQLN2 UBL, 20 mM NaPO4, 50 mM sodium chloride, 2 mM DTT, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
31	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
32	NaPO4	natural abundance	20 mM
33	sodium chloride	natural abundance	50 mM
34	DTT	natural abundance	2 mM
35	sodium azide	natural abundance	0.1 %

13 3D 1H-13C half-filter NOESY

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

14 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

15 3D 1H-13C NOESY aliphatic

Instrument

Bruker Avance - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

16 3D 1H-13C half-filter NOESY

Instrument

Bruker Avance - 800 MHz

Sample

#	Name	Isotope labeling	Concentration
31	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
32	NaPO4	natural abundance	20 mM
33	sodium chloride	natural abundance	50 mM
34	DTT	natural abundance	2 mM
35	sodium azide	natural abundance	0.1 %

17 2D 1H-13C HSQC aliphatic

Instrument

Bruker Avance - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

18 3D HCCH-TOCSY

Instrument

Bruker Avance - 700 MHz

Sample

#	Name	Isotope labeling	Concentration
25	hRpn10 196-306	natural abundance	0.6 mM
26	UBQLN2 UBL	[U-100% 13C; U-100% 15N]	0.6 mM
27	NaPO4	natural abundance	20 mM
28	sodium chloride	natural abundance	50 mM
29	DTT	natural abundance	2 mM
30	sodium azide	natural abundance	0.1 %

Chemical shift validation 4 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr30528_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr30528_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	3054		100.0 (chain: 1, length: 111), 100.0 (chain: 2, length: 78)
1	Chemical shift references	chem_shift_reference_1	Warning	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 111, Sequence coverage: 100.0%
  - Entity_assembly_ID: 2, Chain length: 78, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 1924
  - ¹³C chemical shifts: 851
  - ¹⁵N chemical shifts: 279
- Completeness of assignments
  - Entity_assemble_ID: 1
  - Entity_assemble_ID: 2
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1
  - Chain_ID: 2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	610	594	97.4
¹³C chemical shifts	454	313	68.9
¹⁵N chemical shifts	123	117	95.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	228	228	100.0
¹³C chemical shifts	222	111	50.0
¹⁵N chemical shifts	108	108	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	382	366	95.8
¹³C chemical shifts	232	202	87.1
¹⁵N chemical shifts	15	9	60.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	61	61	100.0
¹³C chemical shifts	61	61	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	24	20	83.3
¹³C chemical shifts	24	0	0.0

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
27	SER	HG	5.482
28	SER	HG	5.966
37	SER	HG	5.058

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	500	497	99.4
¹³C chemical shifts	373	269	72.1
¹⁵N chemical shifts	82	81	98.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	155	155	100.0
¹³C chemical shifts	156	78	50.0
¹⁵N chemical shifts	74	74	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	345	342	99.1
¹³C chemical shifts	217	191	88.0
¹⁵N chemical shifts	8	7	87.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	52	52	100.0
¹³C chemical shifts	52	52	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	26	24	92.3
¹³C chemical shifts	26	0	0.0

Keywords Complex, STRUCTURAL PROTEIN, proteasome, shuttle factor

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Found 1 Document (2.437 seconds)

BMRB: 30528

Sample #1

Sample #2

Sample #3

Sample #4

Sample #5

Sample #6

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 1, : 1 : 23 : 4 : 13 entities Detail

Related entities 2. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 2, : 2 : 97 entities Detail

Interaction partners 2. 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2, entity 2, : 20 interactors Detail

Experiments performed 18 experiments Detail

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Chemical shift validation 4 contents Detail