Search

SMARCB1 nucleosome-interacting C-terminal alpha helix
Authors
Valencia, A.M., Sun, Z.Y.J., Seo, H.S., Mashtalir, N., Dhe-Paganon, S., Kadoch, C.
Assembly
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Entity
1. SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (polymer, Thiol state: not present), 41 monomers, 4740.406 Da Detail

GPLGSMPLLE TLTDAEMEKK IRDQDRNTRR MRRLANTAPA W


Formula weight
4740.406 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chemcal Shifts
1H: 282, 13C: 172, 15N: 41 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111GLYHA2H4.0010.000
211GLYHA3H4.0010.000
311GLYCAC43.4630.000
412PROHAH4.4900.000
512PROHB2H2.3380.000
612PROHB3H1.9660.000
712PROHG2H2.0330.000
812PROHG3H2.0330.000
912PROHD2H3.5920.000
1012PROHD3H3.5920.000
1112PROCC177.2080.000
1212PROCAC63.1380.000
1312PROCBC32.4500.000
1412PROCGC27.2340.000
1512PROCDC49.7410.000
1613LEUHH8.6420.000
1713LEUHAH4.3610.000
1813LEUHB2H1.6960.000
1913LEUHB3H1.6270.000
2013LEUHD11H0.9290.000
2113LEUHD12H0.9290.000
2213LEUHD13H0.9290.000
2313LEUHD21H0.8790.000
2413LEUHD22H0.8790.000
2513LEUHD23H0.8790.000
2613LEUCC178.1250.000
2713LEUCAC55.5920.000
2813LEUCBC42.3320.000
2913LEUCD1C25.4260.000
3013LEUCD2C23.3570.000
3113LEUNN122.8860.000
3214GLYHH8.5190.000
3314GLYHA2H3.9910.000
3414GLYHA3H3.9910.000
3514GLYCC174.1370.000
3614GLYCAC45.2800.000
3714GLYNN110.2710.000
3815SERHH8.2210.000
3915SERHAH4.4640.000
4015SERHB2H3.8550.000
4115SERHB3H3.8550.000
4215SERCC174.3530.000
4315SERCAC58.2840.000
4415SERCBC64.0170.000
4515SERNN115.5430.000
4616METHH8.4390.000
4716METHAH4.8380.000
4816METHB2H2.1020.000
4916METHB3H1.9830.000
5016METHG2H2.6600.000
5116METHG3H2.5790.000
5216METCC174.2360.000
5316METCAC53.4790.000
5416METCBC32.3360.000
5516METCGC32.1640.000
5616METNN123.4650.000
5717PROHAH4.4060.000
5817PROHB2H2.2930.000
5917PROHB3H1.8690.000
6017PROHG2H2.0230.000
6117PROHG3H2.0230.000
6217PROHD2H3.8450.000
6317PROHD3H3.7000.000
6417PROCC176.6980.000
6517PROCAC63.1420.000
6617PROCBC32.1700.000
6717PROCGC27.4350.000
6817PROCDC50.7370.000
6918LEUHH8.4320.000
7018LEUHAH4.3210.000
7118LEUHB2H1.6510.000
7218LEUHB3H1.5890.000
7318LEUHD11H0.9430.000
7418LEUHD12H0.9430.000
7518LEUHD13H0.9430.000
7618LEUHD21H0.8960.000
7718LEUHD22H0.8960.000
7818LEUHD23H0.8960.000
7918LEUCC177.4660.000
8018LEUCAC55.2470.000
8118LEUCBC42.3240.000
8218LEUCD1C25.0850.000
8318LEUCD2C23.7340.000
8418LEUNN122.7070.000
8519LEUHH8.3240.000
8619LEUHAH4.3720.000
8719LEUHB2H1.6470.000
8819LEUHB3H1.6020.000
8919LEUHD11H0.9350.000
9019LEUHD12H0.9350.000
9119LEUHD13H0.9350.000
9219LEUHD21H0.8780.000
9319LEUHD22H0.8780.000
9419LEUHD23H0.8780.000
9519LEUCC177.3580.000
9619LEUCAC55.2480.000
9719LEUCBC42.3720.000
9819LEUCD1C24.9380.000
9919LEUCD2C23.6350.000
10019LEUNN123.7880.000
101110GLUHH8.4870.000
102110GLUHAH4.3470.000
103110GLUHB2H2.0550.000
104110GLUHB3H1.9460.000
105110GLUHG2H2.2710.000
106110GLUHG3H2.2270.000
107110GLUCC176.4780.000
108110GLUCAC56.6400.000
109110GLUCBC30.5050.000
110110GLUCGC36.3640.000
111110GLUNN121.9960.000
112111THRHH8.2960.000
113111THRHAH4.3370.000
114111THRHBH4.1920.000
115111THRHG21H1.2110.000
116111THRHG22H1.2110.000
117111THRHG23H1.2110.000
118111THRCC174.4800.000
119111THRCAC61.9300.000
120111THRCBC69.9270.000
121111THRCG2C21.7680.000
122111THRNN116.1730.000
123112LEUHH8.3780.000
124112LEUHAH4.5550.000
125112LEUHB2H1.6980.000
126112LEUHB3H1.6170.000
127112LEUHGH1.6210.000
128112LEUHD11H0.9230.000
129112LEUHD12H0.9230.000
130112LEUHD13H0.9230.000
131112LEUHD21H0.8670.000
132112LEUHD22H0.8670.000
133112LEUHD23H0.8670.000
134112LEUCC177.8530.000
135112LEUCAC55.0740.000
136112LEUCBC42.3380.000
137112LEUCD1C25.4900.000
138112LEUCD2C23.5090.000
139112LEUNN125.4170.000
140113THRHH8.5140.000
141113THRHAH4.3740.000
142113THRHBH4.4540.000
143113THRHG21H1.2880.000
144113THRHG22H1.2880.000
145113THRHG23H1.2880.000
146113THRCC174.9740.000
147113THRCAC61.7010.000
148113THRCBC70.5350.000
149113THRCG2C21.8160.000
150113THRNN114.4430.000
151114ASPHH8.6580.000
152114ASPHAH4.4970.000
153114ASPHB2H2.7630.000
154114ASPHB3H2.6820.000
155114ASPCC177.7750.000
156114ASPCAC56.2010.000
157114ASPCBC40.5360.000
158114ASPNN122.3900.000
159115ALAHH8.4860.000
160115ALAHAH4.1990.000
161115ALAHB1H1.4440.000
162115ALAHB2H1.4440.000
163115ALAHB3H1.4440.000
164115ALACC180.3890.000
165115ALACAC54.6210.000
166115ALACBC18.7090.000
167115ALANN123.2140.000
168116GLUHH8.0780.000
169116GLUHAH4.0980.000
170116GLUHB2H2.2060.000
171116GLUHB3H2.0630.000
172116GLUHG2H2.3600.000
173116GLUHG3H2.2800.000
174116GLUCC179.0780.000
175116GLUCAC58.4760.000
176116GLUCBC30.0610.000
177116GLUCGC36.8460.000
178116GLUNN119.0790.000
179117METHH8.4120.000
180117METHAH4.2810.000
181117METHB2H2.1790.000
182117METHB3H2.1790.000
183117METHG2H2.6620.000
184117METHG3H2.6070.000
185117METCC177.9010.000
186117METCAC57.5940.000
187117METCBC32.1630.000
188117METCGC32.2390.000
189117METNN120.9140.000
190118GLUHH8.2550.000
191118GLUHAH4.0540.000
192118GLUHB2H2.0720.000
193118GLUHB3H2.0720.000
194118GLUHG2H2.3780.000
195118GLUHG3H2.2610.000
196118GLUCC178.4040.000
197118GLUCAC58.8520.000
198118GLUCBC29.5670.000
199118GLUCGC36.2940.000
200118GLUNN119.6940.000
201119LYSHH7.7920.000
202119LYSHAH4.0380.000
203119LYSHB2H1.9250.000
204119LYSHB3H1.8750.000
205119LYSHG2H1.5310.000
206119LYSHG3H1.4380.000
207119LYSHD2H1.7040.000
208119LYSHD3H1.7040.000
209119LYSHE2H2.9970.000
210119LYSHE3H2.9970.000
211119LYSCC177.5740.000
212119LYSCAC58.7860.000
213119LYSCBC32.7100.000
214119LYSCGC25.2230.000
215119LYSCDC29.2610.000
216119LYSCEC42.2400.000
217119LYSNN119.8930.000
218120LYSHH7.9150.000
219120LYSHAH4.1710.000
220120LYSHB2H1.9240.000
221120LYSHB3H1.9240.000
222120LYSHG2H1.5680.000
223120LYSHG3H1.4180.000
224120LYSHD2H1.7010.000
225120LYSHD3H1.7010.000
226120LYSHE2H2.9820.000
227120LYSHE3H2.9820.000
228120LYSCC178.7680.000
229120LYSCAC58.6290.000
230120LYSCBC32.7100.000
231120LYSCGC25.1170.000
232120LYSCDC29.4060.000
233120LYSCEC42.2160.000
234120LYSNN119.8850.000
235121ILEHH8.0510.000
236121ILEHAH3.8930.000
237121ILEHBH1.9290.000
238121ILEHG12H1.6270.000
239121ILEHG13H1.2270.000
240121ILEHG21H0.9300.000
241121ILEHG22H0.9300.000
242121ILEHG23H0.9300.000
243121ILEHD11H0.8540.000
244121ILEHD12H0.8540.000
245121ILEHD13H0.8540.000
246121ILECC178.0320.000
247121ILECAC63.4260.000
248121ILECBC38.2380.000
249121ILECG1C28.4110.000
250121ILECG2C17.4180.000
251121ILECD1C12.9520.000
252121ILENN120.3120.000
253122ARGHH8.2210.000
254122ARGHAH4.2220.000
255122ARGHB2H1.9330.000
256122ARGHB3H1.9330.000
257122ARGHG2H1.7940.000
258122ARGHG3H1.6560.000
259122ARGHD2H3.2320.000
260122ARGHD3H3.2320.000
261122ARGCC178.4610.000
262122ARGCAC58.3330.000
263122ARGCBC30.4730.000
264122ARGCGC27.4490.000
265122ARGCDC43.6550.000
266122ARGNN122.3710.000
267123ASPHH8.5290.000
268123ASPHAH4.4940.000
269123ASPHB2H2.7570.000
270123ASPHB3H2.7210.000
271123ASPCC177.8680.000
272123ASPCAC56.2960.000
273123ASPCBC40.5760.000
274123ASPNN120.5820.000
275124GLNHH8.2060.000
276124GLNHAH4.2180.000
277124GLNHB2H2.1760.000
278124GLNHB3H2.1760.000
279124GLNHG2H2.4960.000
280124GLNHG3H2.4380.000
281124GLNHE21H7.6140.000
282124GLNHE22H6.9470.000
283124GLNCC177.4090.000
284124GLNCAC57.7690.000
285124GLNCBC28.8270.000
286124GLNCGC33.9040.000
287124GLNNN119.9770.000
288124GLNNE2N112.2950.000
289125ASPHH8.3060.000
290125ASPHAH4.5540.000
291125ASPHB2H2.7890.000
292125ASPHB3H2.7890.000
293125ASPCC177.5060.000
294125ASPCAC55.9230.000
295125ASPCBC41.1090.000
296125ASPNN120.8510.000
297126ARGHH8.2100.000
298126ARGHAH4.1230.000
299126ARGHB2H1.9260.000
300126ARGHB3H1.9260.000
301126ARGHG2H1.7570.000
302126ARGHG3H1.6320.000
303126ARGHD2H3.2370.000
304126ARGHD3H3.2370.000
305126ARGCC177.8840.000
306126ARGCAC58.3110.000
307126ARGCBC30.2760.000
308126ARGCGC27.5210.000
309126ARGCDC43.2570.000
310126ARGNN120.7350.000
311127ASNHH8.4070.000
312127ASNHAH4.6590.000
313127ASNHB2H2.9040.000
314127ASNHB3H2.9040.000
315127ASNHD21H7.7810.000
316127ASNHD22H7.0420.000
317127ASNCC176.6580.000
318127ASNCAC54.9310.000
319127ASNCBC38.7190.000
320127ASNNN118.4630.000
321127ASNND2N113.9400.000
322128THRHH8.2760.000
323128THRHAH4.1590.000
324128THRHBH4.3340.000
325128THRHG21H1.2530.000
326128THRHG22H1.2530.000
327128THRHG23H1.2530.000
328128THRCC175.7420.000
329128THRCAC64.2890.000
330128THRCBC69.3170.000
331128THRCG2C21.8590.000
332128THRNN115.7150.000
333129ARGHH8.2390.000
334129ARGHAH4.1670.000
335129ARGHB2H1.8790.000
336129ARGHB3H1.8790.000
337129ARGHG2H1.7450.000
338129ARGHG3H1.6180.000
339129ARGHD2H3.2250.000
340129ARGHD3H3.1850.000
341129ARGCC177.4880.000
342129ARGCAC58.0450.000
343129ARGCBC30.3440.000
344129ARGCGC27.5910.000
345129ARGCDC43.5970.000
346129ARGNN122.2550.000
347130ARGHH8.1500.000
348130ARGHAH4.2140.000
349130ARGHB2H1.9220.000
350130ARGHB3H1.8720.000
351130ARGHG2H1.6940.000
352130ARGHG3H1.6040.000
353130ARGHD2H3.2170.000
354130ARGHD3H3.2170.000
355130ARGCC177.2470.000
356130ARGCAC57.5820.000
357130ARGCBC30.5430.000
358130ARGCGC27.4120.000
359130ARGCDC43.4850.000
360130ARGNN120.8900.000
361131METHH8.2470.000
362131METHAH4.3760.000
363131METHB2H2.1180.000
364131METHB3H2.1180.000
365131METHG2H2.6810.000
366131METHG3H2.5730.000
367131METCC177.2330.000
368131METCAC56.4580.000
369131METCBC32.4830.000
370131METCGC32.0620.000
371131METNN119.9280.000
372132ARGHH8.2310.000
373132ARGHAH4.2680.000
374132ARGHB2H1.8770.000
375132ARGHB3H1.8310.000
376132ARGHG2H1.7260.000
377132ARGHG3H1.6470.000
378132ARGHD2H3.1930.000
379132ARGHD3H3.1930.000
380132ARGCC176.7670.000
381132ARGCAC57.0460.000
382132ARGCBC30.6680.000
383132ARGCGC27.3590.000
384132ARGCDC43.5350.000
385132ARGNN121.6030.000
386133ARGHH8.2310.000
387133ARGHAH4.2880.000
388133ARGHB2H1.8900.000
389133ARGHB3H1.8200.000
390133ARGHG2H1.6950.000
391133ARGHG3H1.6180.000
392133ARGHD2H3.2200.000
393133ARGHD3H3.2200.000
394133ARGCC176.9500.000
395133ARGCAC56.8640.000
396133ARGCBC30.5890.000
397133ARGCGC27.3290.000
398133ARGCDC43.4350.000
399133ARGNN121.7130.000
400134LEUHH8.2580.000
401134LEUHAH4.3150.000
402134LEUHB2H1.7070.000
403134LEUHB3H1.7070.000
404134LEUHD11H0.9390.000
405134LEUHD12H0.9390.000
406134LEUHD13H0.9390.000
407134LEUHD21H0.8870.000
408134LEUHD22H0.8870.000
409134LEUHD23H0.8870.000
410134LEUCC177.5180.000
411134LEUCAC55.4550.000
412134LEUCD1C24.9720.000
413134LEUCD2C23.5420.000
414134LEUNN122.8380.000
415135ALAHH8.2060.000
416135ALAHAH4.2830.000
417135ALAHB1H1.4180.000
418135ALAHB2H1.4180.000
419135ALAHB3H1.4180.000
420135ALACC177.6460.000
421135ALACAC52.7970.000
422135ALACBC19.2310.000
423135ALANN123.8190.000
424136ASNHH8.3640.000
425136ASNHAH4.7230.000
426136ASNHB2H2.8810.000
427136ASNHB3H2.8010.000
428136ASNHD21H7.6690.000
429136ASNHD22H6.9610.000
430136ASNCC175.4000.000
431136ASNCAC53.4100.000
432136ASNCBC38.7520.000
433136ASNNN117.4390.000
434136ASNND2N112.9900.000
435137THRHH8.0320.000
436137THRHAH4.3140.000
437137THRHBH4.2270.000
438137THRHG21H1.2060.000
439137THRHG22H1.2060.000
440137THRHG23H1.2060.000
441137THRCC173.9980.000
442137THRCAC61.7370.000
443137THRCBC69.9800.000
444137THRCG2C21.7030.000
445137THRNN113.8750.000
446138ALAHH8.3220.000
447138ALAHAH4.5770.000
448138ALAHB1H1.3530.000
449138ALAHB2H1.3530.000
450138ALAHB3H1.3530.000
451138ALACC175.3150.000
452138ALACAC50.6620.000
453138ALACBC18.1990.000
454138ALANN128.1080.000
455139PROHAH4.2650.000
456139PROHB2H2.0660.000
457139PROHB3H1.6370.000
458139PROHG2H1.9400.000
459139PROHG3H1.9400.000
460139PROHD2H3.7710.000
461139PROHD3H3.5880.000
462139PROCC176.3680.000
463139PROCAC62.9700.000
464139PROCBC32.0160.000
465139PROCGC27.4600.000
466139PROCDC50.4420.000
467140ALAHH8.2370.000
468140ALAHAH4.2540.000
469140ALAHB1H1.2870.000
470140ALAHB2H1.2870.000
471140ALAHB3H1.2870.000
472140ALACC176.3430.000
473140ALACAC52.2440.000
474140ALACBC19.3220.000
475140ALANN124.7560.000
476141TRPHH7.5540.000
477141TRPHAH4.4930.000
478141TRPHB2H3.3430.000
479141TRPHB3H3.1900.000
480141TRPHD1H7.1990.000
481141TRPHE1H10.0980.000
482141TRPHE3H7.6600.000
483141TRPHZ2H7.4860.000
484141TRPHZ3H7.1440.000
485141TRPHH2H7.2240.000
486141TRPCC180.8770.000
487141TRPCAC58.3660.000
488141TRPCBC30.0090.000
489141TRPCD1C127.0990.000
490141TRPCE3C121.5280.000
491141TRPCZ2C114.5080.000
492141TRPCZ3C121.6920.000
493141TRPCH2C124.5000.000
494141TRPNN124.8160.000
495141TRPNE1N128.8530.000

Protein Blocks Logo
Calculated from 10 models in PDB: 6UCH, Strand ID: A Detail


Release date
2019-09-30
Citation
Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling
Valencia, A.M., Collings, C.K., Dao, H.T., St Pierre, R., Cheng, Y.C., Huang, J., Sun, Z.Y., Seo, H.S., Mashtalir, N., Comstock, D.E., Bolonduro, O., Vangos, N.E., Yeoh, Z.C., Dornon, M.K., Hermawan, C., Barrett, L., Dhe-Paganon, S., Woolf, C.J., Muir, T.W., Kadoch, C.
Cell (2019), 179, 1342-1356, PubMed 31759698 , DOI 10.1016/j.cell.2019.10.044 ,
Related entities 1. SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, : 1 : 11 : 10 entities Detail
Interaction partners 1. SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, : 17 interactors Detail
Experiments performed 13 experiments Detail
Chemical shift validation 3 contents Detail
Keywords Alpha Helix, Arginine cluster, BAF complex, BAF47, Chromatin Remodeling, NUCLEAR PROTEIN, Nucleosome Binding, Positive charge cluster, SMARCB1, mSWI-SNF complex