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BMRB: 30721

6VRJ

Solution structure of Pseudomonas aeruginosa IF3 C-terminal domain

Authors

Zhang, Y., Li, L.

Assembly

Translation initiation factor IF-3

Entity

1. Translation initiation factor IF-3 (polymer, Thiol state: not present), 97 monomers, 11263.06 Da Detail

VAKKNQKQAQ VKEIKFRPGT EEGDYQVKLR NLVRFLSEGD KAKVSLRFRG REMAHQELGM ELLKRVEADL VEYGTVEQHP KLEGRQLMMV IAPKKKK

Formula weight

11263.06 Da

Source organism

Pseudomonas aeruginosa

Exptl. method

Refine. method

simulated annealing

Data set

assigned_chemical_shifts, spectral_peak_list

Chem. Shift Complete

Sequence coverage: 97.9 %, Completeness: 77.3 %, Completeness (bb): 96.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	77.3 % (938 of 1214)	71.8 % (464 of 646)	84.0 % (384 of 457)	81.1 % (90 of 111)
Backbone	96.0 % (553 of 576)	94.9 % (188 of 198)	96.8 % (275 of 284)	95.7 % (90 of 94)
Sidechain	65.1 % (474 of 728)	61.6 % (276 of 448)	75.3 % (198 of 263)	0.0 % (0 of 17)
Aromatic	25.9 % (14 of 54)	51.9 % (14 of 27)	0.0 % (0 of 27)
Methyl	100.0 % (100 of 100)	100.0 % (50 of 50)	100.0 % (50 of 50)

1. entity 1

VAKKNQKQAQ VKEIKFRPGT EEGDYQVKLR NLVRFLSEGD KAKVSLRFRG REMAHQELGM ELLKRVEADL VEYGTVEQHP KLEGRQLMMV IAPKKKK

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	PaIF3C	[U-15N]		1.0 (±0.2) mM
2	KPO4	natural abundance		25 mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-13C; U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	PaIF3C	[U-13C; U-15N]		1.0 (±0.2) mM
4	KPO4	natural abundance		25 mM

Sample #3

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-99% 13C; U-99% 15N] PaIF3C, 25 mM KPO4, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	PaIF3C	[U-99% 13C; U-99% 15N]		1.0 (±0.2) mM
6	KPO4	natural abundance		25 mM

Protein Blocks Logo

Calculated from 10 models in PDB: 6VRJ, Strand ID: A Detail

Release date

2020-05-05

Citation

Solution structure of Pseudomonas aeruginosa IF3 C-terminal domain
Zhang, Y., Li, L.

Related entities 1. Translation initiation factor IF-3, : 1 : 1 : 126 entities Detail

Experiments performed 10 experiments Detail

1 2D 1H-15N HSQC

Instrument

Bruker AVANCE III - 600 MHz 600 MHZ Bruker Ultra Shield Plus NMR spectrometer

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	PaIF3C	[U-15N]		1.0 (±0.2) mM
2	KPO4	natural abundance		25 mM

2 3D 1H-15N NOESY

Instrument

Bruker AVANCE III - 600 MHz 600 MHZ Bruker Ultra Shield Plus NMR spectrometer

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	PaIF3C	[U-15N]		1.0 (±0.2) mM
2	KPO4	natural abundance		25 mM

3 3D 1H-15N TOCSY

Instrument

Bruker AVANCE III - 600 MHz 600 MHZ Bruker Ultra Shield Plus NMR spectrometer

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	PaIF3C	[U-15N]		1.0 (±0.2) mM
2	KPO4	natural abundance		25 mM

4 3D CBCA(CO)NH

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-13C; U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	PaIF3C	[U-13C; U-15N]		1.0 (±0.2) mM
4	KPO4	natural abundance		25 mM

5 3D HNCACB

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-13C; U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	PaIF3C	[U-13C; U-15N]		1.0 (±0.2) mM
4	KPO4	natural abundance		25 mM

6 3D HBHA(CO)NH

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-13C; U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	PaIF3C	[U-13C; U-15N]		1.0 (±0.2) mM
4	KPO4	natural abundance		25 mM

7 3D C(CO)NH

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-13C; U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	PaIF3C	[U-13C; U-15N]		1.0 (±0.2) mM
4	KPO4	natural abundance		25 mM

8 3D HNCO

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-13C; U-15N] PaIF3C, 25 mM KPO4, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	PaIF3C	[U-13C; U-15N]		1.0 (±0.2) mM
4	KPO4	natural abundance		25 mM

9 3D 1H-13C NOESY

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-99% 13C; U-99% 15N] PaIF3C, 25 mM KPO4, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	PaIF3C	[U-99% 13C; U-99% 15N]		1.0 (±0.2) mM
6	KPO4	natural abundance		25 mM

10 3D HCCH-TOCSY

Instrument

Bruker AVANCE - 700 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 6.5, Details 1.0 mM [U-99% 13C; U-99% 15N] PaIF3C, 25 mM KPO4, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	PaIF3C	[U-99% 13C; U-99% 15N]		1.0 (±0.2) mM
6	KPO4	natural abundance		25 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr30721_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr30721_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	1025		97.9 (chain: 1, length: 97)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 97, Sequence coverage: 97.9%
- Total number of assignments
  - ¹H chemical shifts: 559
  - ¹³C chemical shifts: 376
  - ¹⁵N chemical shifts: 90
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Keywords TRANSLATION, translation initiation factor 3