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BMRB: 30819

7KW9

NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis

Authors

Alphonse, S., Dantuluri, S., Banerjee, A., Shuman, S., Ghose, R.

Assembly

tRNA 2'-phosphotransferase (E.C.2.7.1.160)

Entity

1. tRNA 2'-phosphotransferase (E.C.2.7.1.160) (polymer, Thiol state: not present), 178 monomers, 19810.75 Da Detail

GSHMVKVSKF LSLVLRHNPA LIGLDLDANG WAPVKELLAK MKAKGHGISM EELKHIVETN SKKRFAFSEN FEKIRANQGH SVEVDLGYEK QVPPAVLFHG TAEKNFDLIL KDGIKKMSRH HVHLSQDITT ARKVGMRHGK PVVLSVDAKG MADGGFDFYL SNNGVWLIDF VPAEFIKV

Formula weight

19810.75 Da

Source organism

Runella slithyformis

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 87.7 %, Completeness (bb): 95.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	87.7 % (1856 of 2117)	85.6 % (939 of 1097)	88.3 % (732 of 829)	96.9 % (185 of 191)
Backbone	95.3 % (1006 of 1056)	96.4 % (352 of 365)	93.4 % (485 of 519)	98.3 % (169 of 172)
Sidechain	82.2 % (1006 of 1224)	80.2 % (587 of 732)	85.2 % (403 of 473)	84.2 % (16 of 19)
Aromatic	56.1 % (101 of 180)	63.3 % (57 of 90)	47.7 % (42 of 88)	100.0 % (2 of 2)
Methyl	100.0 % (206 of 206)	100.0 % (103 of 103)	100.0 % (103 of 103)

1. entity 1

GSHMVKVSKF LSLVLRHNPA LIGLDLDANG WAPVKELLAK MKAKGHGISM EELKHIVETN SKKRFAFSEN FEKIRANQGH SVEVDLGYEK QVPPAVLFHG TAEKNFDLIL KDGIKKMSRH HVHLSQDITT ARKVGMRHGK PVVLSVDAKG MADGGFDFYL SNNGVWLIDF VPAEFIKV

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 300 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % v/v sodium azide, 50 uM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	Tpt1	[U-13C; U-15N]	300 uM
2	HEPES	natural abundance	20 mM
3	sodium chloride	natural abundance	200 mM
4	DTT	natural abundance	2 mM
5	EDTA	[U-100% 2H]	2 mM
6	glycerol	[U-100% 2H]	5 % v/v
7	AEBSF protease inhibitor	natural abundance	0.5 mM
8	sodium azide	natural abundance	0.04 % v/v
9	DSS	natural abundance	50 uM

Sample #2

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 360 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % v/v sodium azide, 50 uM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
10	Tpt1	[U-13C; U-15N]	360 uM
11	HEPES	natural abundance	20 mM
12	sodium chloride	natural abundance	200 mM
13	DTT	natural abundance	2 mM
14	EDTA	[U-100% 2H]	2 mM
15	glycerol	[U-100% 2H]	5 % v/v
16	AEBSF protease inhibitor	natural abundance	0.5 mM
17	sodium azide	natural abundance	0.04 % v/v
18	DSS	natural abundance	50 uM

Sample #3

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 300 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 1 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 uM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
19	Tpt1	[U-13C; U-15N]	300 uM
20	HEPES	natural abundance	20 mM
21	sodium chloride	natural abundance	200 mM
22	DTT	natural abundance	2 mM
23	EDTA	[U-100% 2H]	2 mM
24	glycerol	[U-100% 2H]	5 % v/v
25	AEBSF protease inhibitor	natural abundance	1 mM
26	sodium azide	natural abundance	0.05 % w/v
27	DSS	natural abundance	50 uM

Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 400 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 mM DSS, 100% D2O

#	Name	Isotope labeling	Concentration
28	Tpt1	[U-13C; U-15N]	400 uM
29	HEPES	natural abundance	20 mM
30	sodium chloride	natural abundance	200 mM
31	DTT	natural abundance	2 mM
32	EDTA	[U-100% 2H]	2 mM
33	glycerol	[U-100% 2H]	5 % v/v
34	AEBSF protease inhibitor	natural abundance	0.5 mM
35	sodium azide	natural abundance	0.05 % w/v
36	DSS	natural abundance	50 mM

Sample #5

Solvent system 100% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 400 uM [U-2H; U-15N];[13CD1,1H3]ILE;[13CD1,1H3;13CD2,1H3]LEU; [13CG1,1H3;13CG2,1H3]VAL;[13CE1,1H3]MET;[13CG2,1H3]THR Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 uM DSS, 100% D2O

#	Name	Isotope labeling	Concentration
37	Tpt1	[U-2H; U-15N]; selective methyl groups	400 uM
38	HEPES	natural abundance	20 mM
39	sodium chloride	natural abundance	200 mM
40	DTT	natural abundance	2 mM
41	EDTA	[U-100% 2H]	2 mM
42	glycerol	[U-100% 2H]	5 % v/v
43	AEBSF protease inhibitor	natural abundance	0.5 mM
44	sodium azide	natural abundance	0.05 % w/v
45	DSS	natural abundance	50 uM

Sample #6

Solvent system 100% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 350 uM [U-2H; U-15N];[13CD1,1H3]ILE;[13CD1,1H3;13CD2,1H3]LEU; [13CG1,1H3;13CG2,1H3]VAL;[13CE1,1H3]MET;[13CG2,1H3]THR Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 uM DSS, 100% D2O

#	Name	Isotope labeling	Concentration
46	Tpt1	[U-2H; U-15N]; selective methyl groups	350 uM
47	HEPES	natural abundance	20 mM
48	sodium chloride	natural abundance	200 mM
49	DTT	natural abundance	2 mM
50	EDTA	[U-100% 2H]	2 mM
51	glycerol	[U-100% 2H]	5 % v/v
52	AEBSF protease inhibitor	natural abundance	0.5 mM
53	sodium azide	natural abundance	0.05 % w/v
54	DSS	natural abundance	50 uM

Sample #7

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 420 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % w/v sodium azide, 50 mM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
55	Tpt1	[U-13C; U-15N]	420 uM
56	HEPES	natural abundance	20 mM
57	sodium chloride	natural abundance	200 mM
58	DTT	natural abundance	2 mM
59	EDTA	[U-100% 2H]	2 mM
60	glycerol	[U-100% 2H]	5 % v/v
61	AEBSF protease inhibitor	natural abundance	0.5 mM
62	sodium azide	natural abundance	0.04 % w/v
63	DSS	natural abundance	50 mM

Sample #8

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 380 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % w/v sodium azide, 50 mM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

Sample #9

#	Name	Isotope labeling	Concentration
73	Tpt1	[U-13C; U-15N]	400 uM
74	HEPES	natural abundance	20 mM
75	sodium chloride	natural abundance	200 mM
76	DTT	natural abundance	2 mM
77	EDTA	[U-100% 2H]	2 mM
78	glycerol	[U-100% 2H]	5 % v/v
79	AEBSF protease inhibitor	natural abundance	0.5 mM
80	sodium azide	natural abundance	0.04 % w/v
81	DSS	natural abundance	50 mM

Release date

2021-01-03

Citation

NMR solution structures of Runella slithyformis RNA 2'-phosphotransferase Tpt1 provide insights into NAD+ binding and specificity
Alphonse, S., Banerjee, A., Dantuluri, S., Shuman, S., Ghose, R.
Nucleic Acids Res. (2021), 49, 9607-9624, PubMed 33880546 , DOI 10.1093/nar/gkab241 , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 30820 released on 2021-01-03
Title NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis in complex with NAD+

Related entities 1. tRNA 2'-phosphotransferase (E.C.2.7.1.160), : 1 : 1 : 93 entities Detail

Experiments performed 15 experiments Detail

1 3D 1H-15N NOESY

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 300 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % v/v sodium azide, 50 uM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	Tpt1	[U-13C; U-15N]	300 uM
2	HEPES	natural abundance	20 mM
3	sodium chloride	natural abundance	200 mM
4	DTT	natural abundance	2 mM
5	EDTA	[U-100% 2H]	2 mM
6	glycerol	[U-100% 2H]	5 % v/v
7	AEBSF protease inhibitor	natural abundance	0.5 mM
8	sodium azide	natural abundance	0.04 % v/v
9	DSS	natural abundance	50 uM

2 3D 1H-13C NOESY aliphatic

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 360 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % v/v sodium azide, 50 uM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
10	Tpt1	[U-13C; U-15N]	360 uM
11	HEPES	natural abundance	20 mM
12	sodium chloride	natural abundance	200 mM
13	DTT	natural abundance	2 mM
14	EDTA	[U-100% 2H]	2 mM
15	glycerol	[U-100% 2H]	5 % v/v
16	AEBSF protease inhibitor	natural abundance	0.5 mM
17	sodium azide	natural abundance	0.04 % v/v
18	DSS	natural abundance	50 uM

3 3D 1H-13C NOESY aromatic

Instrument

Bruker AVANCE III HD - 700 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 300 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 1 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 uM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
19	Tpt1	[U-13C; U-15N]	300 uM
20	HEPES	natural abundance	20 mM
21	sodium chloride	natural abundance	200 mM
22	DTT	natural abundance	2 mM
23	EDTA	[U-100% 2H]	2 mM
24	glycerol	[U-100% 2H]	5 % v/v
25	AEBSF protease inhibitor	natural abundance	1 mM
26	sodium azide	natural abundance	0.05 % w/v
27	DSS	natural abundance	50 uM

4 3D 1H-13C NOESY aromatic

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 400 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 mM DSS, 100% D2O

#	Name	Isotope labeling	Concentration
28	Tpt1	[U-13C; U-15N]	400 uM
29	HEPES	natural abundance	20 mM
30	sodium chloride	natural abundance	200 mM
31	DTT	natural abundance	2 mM
32	EDTA	[U-100% 2H]	2 mM
33	glycerol	[U-100% 2H]	5 % v/v
34	AEBSF protease inhibitor	natural abundance	0.5 mM
35	sodium azide	natural abundance	0.05 % w/v
36	DSS	natural abundance	50 mM

5 3D 1H-13C Methyl NOESY

Instrument

Bruker AVANCE III - 600 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 400 uM [U-2H; U-15N];[13CD1,1H3]ILE;[13CD1,1H3;13CD2,1H3]LEU; [13CG1,1H3;13CG2,1H3]VAL;[13CE1,1H3]MET;[13CG2,1H3]THR Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 uM DSS, 100% D2O

#	Name	Isotope labeling	Concentration
37	Tpt1	[U-2H; U-15N]; selective methyl groups	400 uM
38	HEPES	natural abundance	20 mM
39	sodium chloride	natural abundance	200 mM
40	DTT	natural abundance	2 mM
41	EDTA	[U-100% 2H]	2 mM
42	glycerol	[U-100% 2H]	5 % v/v
43	AEBSF protease inhibitor	natural abundance	0.5 mM
44	sodium azide	natural abundance	0.05 % w/v
45	DSS	natural abundance	50 uM

6 1H-13C-13C-1H 4D NOESY

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 350 uM [U-2H; U-15N];[13CD1,1H3]ILE;[13CD1,1H3;13CD2,1H3]LEU; [13CG1,1H3;13CG2,1H3]VAL;[13CE1,1H3]MET;[13CG2,1H3]THR Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.05 % w/v sodium azide, 50 uM DSS, 100% D2O

#	Name	Isotope labeling	Concentration
46	Tpt1	[U-2H; U-15N]; selective methyl groups	350 uM
47	HEPES	natural abundance	20 mM
48	sodium chloride	natural abundance	200 mM
49	DTT	natural abundance	2 mM
50	EDTA	[U-100% 2H]	2 mM
51	glycerol	[U-100% 2H]	5 % v/v
52	AEBSF protease inhibitor	natural abundance	0.5 mM
53	sodium azide	natural abundance	0.05 % w/v
54	DSS	natural abundance	50 uM

7 3D HNCA

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 420 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % w/v sodium azide, 50 mM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
55	Tpt1	[U-13C; U-15N]	420 uM
56	HEPES	natural abundance	20 mM
57	sodium chloride	natural abundance	200 mM
58	DTT	natural abundance	2 mM
59	EDTA	[U-100% 2H]	2 mM
60	glycerol	[U-100% 2H]	5 % v/v
61	AEBSF protease inhibitor	natural abundance	0.5 mM
62	sodium azide	natural abundance	0.04 % w/v
63	DSS	natural abundance	50 mM

8 3D HNCO

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 290.15 K, pH 7, Details 380 uM [U-13C; U-15N] Tpt1, 20 mM HEPES, 200 mM sodium chloride, 2 mM DTT, 2 mM [U-100% 2H] EDTA, 5 % v/v [U-100% 2H] glycerol, 0.5 mM AEBSF protease inhibitor, 0.04 % w/v sodium azide, 50 mM DSS, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

9 3D HN(CA)CO

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

10 3D CBCA(CO)NH

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

11 3D HNCACB

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

12 3D C(CO)NH

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

13 3D H(CCO)NH

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
64	Tpt1	[U-13C; U-15N]	380 uM
65	HEPES	natural abundance	20 mM
66	sodium chloride	natural abundance	200 mM
67	DTT	natural abundance	2 mM
68	EDTA	[U-100% 2H]	2 mM
69	glycerol	[U-100% 2H]	5 % v/v
70	AEBSF protease inhibitor	natural abundance	0.5 mM
71	sodium azide	natural abundance	0.04 % w/v
72	DSS	natural abundance	50 mM

14 3D CCH-TOCSY

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
73	Tpt1	[U-13C; U-15N]	400 uM
74	HEPES	natural abundance	20 mM
75	sodium chloride	natural abundance	200 mM
76	DTT	natural abundance	2 mM
77	EDTA	[U-100% 2H]	2 mM
78	glycerol	[U-100% 2H]	5 % v/v
79	AEBSF protease inhibitor	natural abundance	0.5 mM
80	sodium azide	natural abundance	0.04 % w/v
81	DSS	natural abundance	50 mM

15 3D HCCH-TOCSY

Instrument

Bruker AVANCE III HD - 800 MHz cryogenically-cooled probe

Sample

#	Name	Isotope labeling	Concentration
73	Tpt1	[U-13C; U-15N]	400 uM
74	HEPES	natural abundance	20 mM
75	sodium chloride	natural abundance	200 mM
76	DTT	natural abundance	2 mM
77	EDTA	[U-100% 2H]	2 mM
78	glycerol	[U-100% 2H]	5 % v/v
79	AEBSF protease inhibitor	natural abundance	0.5 mM
80	sodium azide	natural abundance	0.04 % w/v
81	DSS	natural abundance	50 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr30819_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr30819_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	2036		98.9 (chain: 1, length: 178)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 178, Sequence coverage: 98.9%
- Total number of assignments
  - ¹H chemical shifts: 1139
  - ¹³C chemical shifts: 718
  - ¹⁵N chemical shifts: 179
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	1097	921	84.0
¹³C chemical shifts	829	718	86.6
¹⁵N chemical shifts	191	179	93.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	365	344	94.2
¹³C chemical shifts	356	317	89.0
¹⁵N chemical shifts	172	163	94.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	732	577	78.8
¹³C chemical shifts	473	401	84.8
¹⁵N chemical shifts	19	16	84.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	109	109	100.0
¹³C chemical shifts	109	109	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	90	55	61.1
¹³C chemical shifts	88	41	46.6
¹⁵N chemical shifts	2	2	100.0

Keywords TRANSFERASE, tRNA 2'-phosphotransferase

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Found 1 Document (0.579 seconds)

BMRB: 30819

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Entries sharing articles BMRB: 1 entries Detail

Related entities 1. tRNA 2'-phosphotransferase (E.C.2.7.1.160), : 1 : 1 : 93 entities Detail

Experiments performed 15 experiments Detail

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Chemical shift validation 3 contents Detail