BMRB: 30842

SARS-CoV-2 spike Protein TM domain

Authors

Fu, Q., Chou, J.J.

Assembly

Spike glycoprotein

Entity

1. Spike glycoprotein (polymer, Thiol state: not present), 21 monomers, 2200.701 × 3 Da Detail

WLGFIAGLIA IVLVTILLSS T

Total weight

6602.1025 Da

Max. entity weight

2200.701 Da

Source organism

Severe acute respiratory syndrome coronavirus 2

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 32.9 %, Completeness (bb): 64.3 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	32.9 % (81 of 246)	16.7 % (20 of 120)	39.4 % (41 of 104)	90.9 % (20 of 22)
Backbone	64.3 % (81 of 126)	45.5 % (20 of 44)	67.2 % (41 of 61)	95.2 % (20 of 21)
Sidechain	0.0 % (0 of 139)	0.0 % (0 of 76)	0.0 % (0 of 62)	0.0 % (0 of 1)
Aromatic	0.0 % (0 of 22)	0.0 % (0 of 11)	0.0 % (0 of 10)	0.0 % (0 of 1)
Methyl	0.0 % (0 of 52)	0.0 % (0 of 26)	0.0 % (0 of 26)

1. entity 1

WLGFIAGLIA IVLVTILLSS T

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 6.8, Details 55 mM [U-99% 2H] 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM [U-99% 2H] 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-13C; U-15N] Spike glycoprotein, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	1,2-dimyristoyl-sn-Glycero-3-Phosphocholine	[U-99% 2H]		55 mM
2	1,2-dihexanoyl-sn-Glycero-3-Phosphocholine	[U-99% 2H]		100 mM
3	TRIS	natural abundance		20 mM
4	sodium azide	natural abundance		0.02 %
5	sodium chloride	natural abundance		20 mM
6	Spike glycoprotein	[U-13C; U-15N]		1 mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 6.8, Details 55 mM [U-99% 2H] 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM [U-99% 2H] 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-13C; U-15N; U-2H] Spike glycoprotein, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
7	1,2-dimyristoyl-sn-Glycero-3-Phosphocholine	[U-99% 2H]		55 mM
8	1,2-dihexanoyl-sn-Glycero-3-Phosphocholine	[U-99% 2H]		100 mM
9	TRIS	natural abundance		20 mM
10	sodium azide	natural abundance		0.02 %
11	sodium chloride	natural abundance		20 mM
12	Spike glycoprotein	[U-13C; U-15N; U-2H]		1 mM

Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 6.8, Details 55 mM 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-15N; U-2H] Spike glycoprotein, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
13	1,2-dimyristoyl-sn-Glycero-3-Phosphocholine	natural abundance		55 mM
14	1,2-dihexanoyl-sn-Glycero-3-Phosphocholine	natural abundance		100 mM
15	TRIS	natural abundance		20 mM
16	sodium azide	natural abundance		0.02 %
17	sodium chloride	natural abundance		20 mM
18	Spike glycoprotein	[U-15N; U-2H]		1 mM

Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 6.8, Details 55 mM 1,2-dimyristoyl-sn-Glycero-3-Phosphocholine, 100 mM 1,2-dihexanoyl-sn-Glycero-3-Phosphocholine, 20 mM TRIS, 0.02 % sodium azide, 20 mM sodium chloride, 1 mM [U-13C; U-15N; U-2H] Spike glycoprotein, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
19	1,2-dimyristoyl-sn-Glycero-3-Phosphocholine	natural abundance		55 mM
20	1,2-dihexanoyl-sn-Glycero-3-Phosphocholine	natural abundance		100 mM
21	TRIS	natural abundance		20 mM
22	sodium azide	natural abundance		0.02 %
23	sodium chloride	natural abundance		20 mM
24	Spike glycoprotein	[U-13C; U-15N; U-2H]		1 mM

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Release date

2021-02-04

Citation

A Trimeric Hydrophobic Zipper Mediates the Intramembrane Assembly of SARS-CoV-2 Spike
Fu, Q., Chou, J.J.
J. Am. Chem. Soc. (2021), 143, 8543-8546, PubMed 34086443 , DOI 10.1021/jacs.1c02394 , Abstract

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Experiments performed 6 experiments Detail

Chemical shift validation 3 contents Detail