BMRB: 30853

Denv1 5'UTR Stem3

Authors

Sun, Y.T., Varani, G.

Assembly

Denv1 Stem3 RNA (28-MER)

Entity

1. Denv1 Stem3 RNA (28-MER) (polymer, Thiol state: not present), 28 monomers, 9079.423 Da Detail

GGCCGACAAG AACAGUUUCG AAUCGGCC

Formula weight

9079.423 Da

Source organism

Escherichia phage T7

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 119 assignments Detail

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• NMR-STAR v3.1 (partial)
• BMRB/XML (partial)
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• TSV

ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	G	H1'	H	6.132	0.84	1
2	1	1	G	H8	H	6.364	1.15	1
3	1	1	G	H2'	H	5.309	1.24	1
4	1	2	G	H1'	H	5.688	0.00	1
5	1	2	G	H3'	H	4.416	0.00	4
6	1	2	G	H8	H	7.256	0.00	1
7	1	2	G	H2'	H	4.450	0.00	1
8	1	3	C	H1'	H	5.476	0.00	1
9	1	3	C	H3'	H	4.389	0.00	4
10	1	3	C	H5	H	5.132	0.00	1
11	1	3	C	H6	H	7.578	0.00	1
12	1	3	C	H2'	H	4.240	0.00	1
13	1	4	C	H1'	H	5.486	0.00	1
14	1	4	C	H5	H	5.466	0.00	1
15	1	4	C	H6	H	7.632	0.00	1
16	1	4	C	H2'	H	4.592	0.00	1
17	1	5	G	H1'	H	5.613	0.00	1
18	1	5	G	H3'	H	4.449	0.00	4
19	1	5	G	H8	H	7.441	0.00	1
20	1	5	G	H2'	H	4.641	0.00	1
21	1	6	A	H1'	H	5.793	0.00	1
22	1	6	A	H3'	H	4.422	0.00	4
23	1	6	A	H8	H	7.499	0.00	1
24	1	6	A	H2'	H	4.628	0.00	1
25	1	7	C	H1'	H	5.312	0.00	1
26	1	7	C	H5	H	5.264	0.00	1
27	1	7	C	H6	H	7.392	0.00	1
28	1	7	C	H2'	H	4.883	0.00	1
29	1	8	A	H1'	H	5.769	0.00	1
30	1	8	A	H3'	H	4.768	0.00	4
31	1	8	A	H8	H	7.752	0.00	1
32	1	8	A	H2'	H	4.885	0.00	1
33	1	9	A	H1'	H	5.761	0.00	1
34	1	9	A	H8	H	8.072	0.01	1
35	1	9	A	H2'	H	4.885	0.00	1
36	1	10	G	H1'	H	5.763	0.00	1
37	1	10	G	H3'	H	4.426	0.00	4
38	1	10	G	H8	H	7.770	0.21	1
39	1	10	G	H2'	H	4.885	0.00	1
40	1	11	A	H1'	H	5.761	0.00	1
41	1	11	A	H3'	H	4.698	0.00	4
42	1	11	A	H4'	H	4.189	0.00	4
43	1	11	A	H8	H	8.007	0.17	1
44	1	11	A	H2'	H	4.795	0.00	1
45	1	12	A	H1'	H	5.729	0.00	1
46	1	12	A	H3'	H	4.413	0.00	4
47	1	12	A	H8	H	7.329	0.00	1
48	1	12	A	H2'	H	4.351	0.06	1
49	1	13	C	H1'	H	5.973	0.00	1
50	1	13	C	H3'	H	4.400	0.00	4
51	1	13	C	H4'	H	4.190	0.00	4
52	1	13	C	H5	H	5.619	0.30	1
53	1	13	C	H5'	H	3.944	0.00	4
54	1	13	C	H6	H	7.767	0.24	1
55	1	13	C	H2'	H	4.489	0.00	1
56	1	14	A	H1'	H	5.666	0.00	1
57	1	14	A	H3'	H	4.627	0.00	4
58	1	14	A	H8	H	8.256	0.00	1
59	1	14	A	H2'	H	4.489	0.00	1
60	1	15	G	H1'	H	5.758	0.00	1
61	1	15	G	H3'	H	4.436	0.00	4
62	1	15	G	H4'	H	4.491	0.00	4
63	1	15	G	H8	H	7.716	0.00	1
64	1	15	G	H2'	H	4.495	0.00	1
65	1	16	U	H1'	H	5.164	0.00	1
66	1	16	U	H3'	H	4.311	0.00	4
67	1	16	U	H4'	H	4.108	0.00	4
68	1	16	U	H5	H	5.638	0.00	1
69	1	16	U	H6	H	7.911	0.00	1
70	1	16	U	H2'	H	4.175	0.00	1
71	1	17	U	H1'	H	5.467	0.00	1
72	1	17	U	H5	H	5.466	0.00	1
73	1	17	U	H6	H	7.684	0.00	1
74	1	17	U	H2'	H	4.411	0.00	1
75	1	18	U	H1'	H	5.313	0.00	1
76	1	18	U	H3'	H	4.424	0.00	4
77	1	18	U	H5	H	5.365	0.00	1
78	1	18	U	H6	H	7.468	0.00	1
79	1	18	U	H2'	H	4.535	0.00	1
80	1	19	C	H1'	H	5.425	0.00	1
81	1	19	C	H3'	H	4.435	0.00	4
82	1	19	C	H5	H	5.752	0.00	1
83	1	19	C	H6	H	7.917	0.00	1
84	1	19	C	H2'	H	4.293	0.00	1
85	1	20	G	H1'	H	5.768	0.00	1
86	1	20	G	H8	H	7.751	0.00	1
87	1	20	G	H2'	H	4.836	0.00	1
88	1	21	A	H1'	H	5.598	0.00	1
89	1	21	A	H8	H	7.894	0.01	1
90	1	21	A	H2'	H	4.590	0.00	1
91	1	22	A	H1'	H	5.688	0.00	1
92	1	22	A	H8	H	7.256	0.00	1
93	1	22	A	H2'	H	4.414	0.00	1
94	1	23	U	H1'	H	5.873	0.00	1
95	1	23	U	H3'	H	4.514	0.00	4
96	1	23	U	H5	H	5.791	0.00	1
97	1	23	U	H6	H	7.840	0.00	1
98	1	23	U	H2'	H	4.541	0.00	1
99	1	24	C	H1'	H	5.510	0.00	1
100	1	24	C	H3'	H	4.396	0.00	4
101	1	24	C	H5	H	5.212	0.00	1
102	1	24	C	H6	H	7.630	0.00	1
103	1	24	C	H2'	H	4.362	0.00	1
104	1	25	G	H1'	H	5.896	0.00	1
105	1	25	G	H8	H	7.650	0.00	1
106	1	25	G	H2'	H	4.428	0.00	1
107	1	26	G	H1'	H	5.500	0.00	1
108	1	26	G	H21	H	7.627	0.00	2
109	1	26	G	H22	H	7.627	0.00	2
110	1	26	G	H8	H	7.537	0.00	1
111	1	26	G	H2'	H	4.360	0.00	1
112	1	27	C	H1'	H	5.733	0.00	1
113	1	27	C	H5	H	5.497	0.00	1
114	1	27	C	H6	H	7.631	0.00	1
115	1	27	C	H2'	H	3.965	0.00	1
116	1	28	C	H1'	H	5.733	0.00	1
117	1	28	C	H5	H	5.497	0.00	1
118	1	28	C	H6	H	7.630	0.00	1
119	1	28	C	H2'	H	3.966	0.00	1

Release date

2021-02-13

Citation

Structure of the Dengue Virus RNA Promoter
Sun, Y.T., Varani, G.
RNA (2022), 28, 1210-1223, PubMed 35750488 , DOI 10.1261/rna.079197.122 , Abstract

Experiments performed 4 experiments Detail