BMRBj - BMREntryMaster

Found 1 Document (0.542 seconds)

BMRB: 30935

7RFA

NMR Solution structure of linear [T20K]kalataB1

Authors

Harvey, P.J., Craik, D.J., Gruber, C.W.

Assembly

Kalata-B4

Entity

1. Kalata-B4 (polymer, Thiol state: all disulfide bound), 29 monomers, 2943.403 Da Detail

NGLPVCGETC VGGTCNTPGC KCSWPVCTR

Formula weight

2943.403 Da

Entity Connection

disulfide 3 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS6:SG	1:CYS20:SG
2	disulfide	sing	1:CYS10:SG	1:CYS22:SG
3	disulfide	sing	1:CYS15:SG	1:CYS27:SG

Source organism

Oldenlandia affinis

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 83.8 %, Completeness (bb): 80.4 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	83.8 % (244 of 291)	96.0 % (143 of 149)	68.8 % (77 of 112)	80.0 % (24 of 30)
Backbone	80.4 % (135 of 168)	98.3 % (59 of 60)	64.6 % (53 of 82)	88.5 % (23 of 26)
Sidechain	90.5 % (133 of 147)	94.4 % (84 of 89)	88.9 % (48 of 54)	25.0 % (1 of 4)
Aromatic	25.0 % (3 of 12)	50.0 % (3 of 6)	0.0 % (0 of 5)	0.0 % (0 of 1)
Methyl	100.0 % (24 of 24)	100.0 % (12 of 12)	100.0 % (12 of 12)

1. entity 1

NGLPVCGETC VGGTCNTPGC KCSWPVCTR

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 3.3, Details 1.0 mM peptide, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	peptide	natural abundance		1.0 mM

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 3.3, Details 1.0 mM peptide, 100% D2O

#	Name	Isotope labeling	Type	Concentration
2	peptide	natural abundance		1.0 mM

Release date

2021-07-29

Citation

Importance of the Cyclic Cystine Knot Structural Motif for Immunosuppressive Effects of Cyclotides
Hellinger, R., Muratspahic, E., Devi, S., Koehbach, J., Vasileva, M., Harvey, P.J., Craik, D.J., Grundemann, C., Gruber, C.W.
ACS Chem. Biol. (2021), 16, 2373-2386, PubMed 34592097 , DOI 10.1021/acschembio.1c00524 , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 30848 released on 2021-02-07
Title NMR Solution Structure of [T20K]kalata B1

Related entities 1. Kalata-B4, : 1 : 15 : 98 entities Detail

Experiments performed 6 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr30935_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	True (see coordinates for details)
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
1:6:CYS:SG	1:20:CYS:SG	oxidized, CB 41.09 ppm	oxidized, CA 55.192, CB 44.053 ppm	n/a
1:10:CYS:SG	1:22:CYS:SG	oxidized, CA 55.323, CB 46.297 ppm	oxidized, CA 56.666, CB 41.049 ppm	n/a
1:15:CYS:SG	1:27:CYS:SG	oxidized, CA 55.55, CB 44.98 ppm	oxidized, CA 56.855, CB 45.635 ppm	n/a

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr30935_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	267		100.0 (chain: 1, length: 29)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 29, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 167
  - ¹³C chemical shifts: 76
  - ¹⁵N chemical shifts: 24
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	149	143	96.0
¹³C chemical shifts	112	76	67.9
¹⁵N chemical shifts	30	24	80.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	60	59	98.3
¹³C chemical shifts	58	28	48.3
¹⁵N chemical shifts	26	23	88.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	89	84	94.4
¹³C chemical shifts	54	48	88.9
¹⁵N chemical shifts	4	1	25.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	12	12	100.0
¹³C chemical shifts	12	12	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	6	3	50.0
¹³C chemical shifts	5	0	0.0
¹⁵N chemical shifts	1	0	0.0

Keywords BIOSYNTHETIC PROTEIN, linear peptide acyclotide, peptide cyclotide

Search

Query history

Resources

Search for primary databases

Search for subsidiary databases

Display

Hits per page

Statistics

Query Changes will take effect after "OK" button is selected.

Maximum hits

Default conjunction operator

Omni-box

Search filter

Sequence search (BLAST)

E-value

Query sequence coverage

Miscellaneous

The number of previewed publications

Completeness of assigned chemical shift

Sequence chart about top aligned regions

Sequence chart about interacting regions

Hit context with highlight

Link destinations for BMRB, PDB and EMDB

Found 1 Document (0.542 seconds)

BMRB: 30935

Sample #1

Sample #2

Entries sharing articles BMRB: 1 entries Detail

Related entities 1. Kalata-B4, : 1 : 15 : 98 entities Detail

Experiments performed 6 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail