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NMR structure of the C-terminal domain of the Bacteriophage T5 decoration protein pb10
Authors
Vernhes, E., Gilquin, B., Cuniasse, P., Boulanger, P., Zinn-justin, S.
Assembly
Decoration protein
Entity
1. Decoration protein (polymer), 101 monomers, 10327.19 Da Detail

ALTLSKDLTA SMSVEEGAAL TLSVTATGGT GPYTYAWTKD GSPIPDASGA TYTKPTAAAE DAGSYKVTVT DSKQVSKDST TCAVTVNPTV PGGLEHHHHH H


Formula weight
10327.19 Da
Source organism
Escherichia virus T5
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 95.0 %, Completeness: 91.4 %, Completeness (bb): 94.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All91.4 % (943 of 1032)90.9 % (469 of 516)91.4 % (382 of 418)93.9 % (92 of 98)
Backbone94.3 % (560 of 594)94.1 % (193 of 205)94.6 % (278 of 294)93.7 % (89 of 95)
Sidechain88.7 % (470 of 530)88.7 % (276 of 311)88.4 % (191 of 216)100.0 % (3 of 3)
Aromatic70.6 % (48 of 68)70.6 % (24 of 34)69.7 % (23 of 33)100.0 % (1 of 1)
Methyl98.3 % (118 of 120)100.0 % (60 of 60)96.7 % (58 of 60)

1. Decoration protein

ALTLSKDLTA SMSVEEGAAL TLSVTATGGT GPYTYAWTKD GSPIPDASGA TYTKPTAAAE DAGSYKVTVT DSKQVSKDST TCAVTVNPTV PGGLEHHHHH H

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 293 K, pH 7.2, Details 200 uM [U-99% 13C; U-99% 15N] c72, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1c72[U-99% 13C; U-99% 15N]200 uM
2H2Onatural abundance90 %
3D2Onatural abundance10 %

LACS Plot; CA
Referencing offset: 0.14 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: 0.14 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: 0.01 ppm, Outliers: 3 Detail
LACS Plot; CO
Referencing offset: 0.79 ppm, Outliers: 3 Detail
Protein Blocks Logo
Calculated from 20 models in PDB: 5LXK, Strand ID: A Detail


Release date
2016-09-21
Citation
High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid
Vernhes, E., Renouard, M., Gilquin, B., Cuniasse, P., Durand, D., England, P., Hoos, S., Huet, A., Conway, J.F., Glukhov, A., Ksenzenko, V., Jacquet, E., Nhiri, N., Zinn-Justin, S., Boulanger, P.
Sci. Rep. (2017), 7, 41662-41662, PubMed 28165000 , DOI 10.1038/srep41662 ,
Entries sharing articles BMRB: 1, EMDB: 2 entries Detail
  BMRB: 34047 released on 2016-11-10
    Title NMR structure of the N-terminal domain of the Bacteriophage T5 decoration protein pb10
  EMDB: 8419 released on 2016-11-16
    Title High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid
  EMDB: 8423 released on 2016-11-16
    Title High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid
Related entities 1. Decoration protein, : 1 : 27 entities Detail
Experiments performed 10 experiments Detail
NMR combined restraints 5 contents Detail
Keywords Bacteriophage T5 Decoration Protein, Viral protein