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BMRB: 34175

5OVM

Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa

Authors

Viegas, A., Jaeger, K.E., Etzkorn, M., Gohlke, H., Verma, N., Dollinger, P., Kovacic, F.

Assembly

Lipase chaperone

Entity

1. Lipase chaperone (polymer, Thiol state: not present), 89 monomers, 10094.21 Da Detail

MGHHHHHHLP TSFRGTSVDG SFSVDASGNL LITRDIRNLF DYFLSAVGEE PLQQSLDRLR AYIAAELQEP ARGQALALMQ QYIDYKKEL

Formula weight

10094.21 Da

Source organism

Pseudomonas aeruginosa PAO1

Exptl. method

solution NMR

Refine. method

molecular dynamics

Data set

assigned_chemical_shifts, spectral_peak_list

Chem. Shift Complete

Sequence coverage: 86.5 %, Completeness: 80.3 %, Completeness (bb): 79.9 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	80.3 % (831 of 1035)	84.3 % (452 of 536)	76.5 % (310 of 405)	73.4 % (69 of 94)
Backbone	79.9 % (422 of 528)	80.7 % (146 of 181)	82.4 % (215 of 261)	70.9 % (61 of 86)
Sidechain	81.5 % (481 of 590)	86.2 % (306 of 355)	73.6 % (167 of 227)	100.0 % (8 of 8)
Aromatic	37.5 % (36 of 96)	68.8 % (33 of 48)	6.3 % (3 of 48)
Methyl	98.0 % (96 of 98)	98.0 % (48 of 49)	98.0 % (48 of 49)

1. entity 1

MGHHHHHHLP TSFRGTSVDG SFSVDASGNL LITRDIRNLF DYFLSAVGEE PLQQSLDRLR AYIAAELQEP ARGQALALMQ QYIDYKKEL

Show sample condition

Sample #1

Pressure 1 atm, Temperature 303 K, pH 7.4, Details 450 uM [U-13C; U-15N] Lipase-interaction domain 1, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Lipase-interaction domain 1	[U-13C; U-15N]		450 uM
2	Sodium Phosphate buffer	natural abundance		20 mM

Sample #2

Pressure 1 atm, Temperature 303 K, pH 7.4, Details 900 uM [U-13C; U-15N] Lipase-interaction domain 1, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	Lipase-interaction domain 1	[U-13C; U-15N]		900 uM
4	Sodium Phosphate buffer	natural abundance		20 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: -0.15 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: -0.15 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.01 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: -0.29 ppm, Outliers: 3 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 5OVM, Strand ID: A Detail

Release date

2018-12-02

Citation

Structural and dynamic insights revealing how lipase binding domain MD1 of Pseudomonas aeruginosa foldase affects lipase activation
Viegas, A., Dollinger, P., Verma, N., Kubiak, J., Viennet, T., Seidel, C., Gohlke, H., Etzkorn, M., Kovacic, F., Jaeger, K.E.
Sci. Rep. (2020), 10, 3578-3578, PubMed 32107397 , DOI 10.1038/s41598-020-60093-4 , Abstract

Related entities 1. Lipase chaperone, : 1 : 7 entities Detail

Experiments performed 9 experiments Detail

1 2D 1H-15N HSQC