BMRB: 34398

Concerted dynamics of metallo-base pairs in an A/B-form helical transition (apo species)

Authors

Schmidt, O.P., Jurt, S., Johannsen, S., Karimi, A., Sigel, R.K.O., Luedtke, N.W.

Assembly

DNA (5'-D(*CP*GP*TP*CP*TP*CP*AP*TP*GP*AP*TP*AP*CP*G)-3')

Entity

1. DNA (5'-D(*CP*GP*TP*CP*TP*CP*AP*TP*GP*AP*TP*AP*CP*G)-3') (polymer, Thiol state: not present), 14 monomers, 4318.750 × 2 Da Detail

CGTCTCATGA TACG

Total weight

8637.5 Da

Max. entity weight

4318.75 Da

Source organism

synthetic construct

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 98.6 %, Completeness (bb): 98.0 % Detail

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Polymer type: polydeoxyribonucleotide

	Total	1H
All	98.6 % (136 of 138)	98.6 % (136 of 138)
Suger, PO4	98.0 % (96 of 98)	98.0 % (96 of 98)
Nucleobase	100.0 % (40 of 40)	100.0 % (40 of 40)
Aromatic	100.0 % (28 of 28)	100.0 % (28 of 28)
Methyl	100.0 % (4 of 4)	100.0 % (4 of 4)

1. entity 1

CGTCTCATGA TACG

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 278 K, pH 7.75, Details 0.3 mM polydeoxyribonucleotide, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	entity_1	natural abundance		0.3 mM
2	NaClO4	natural abundance		50 mM

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 278 K, pH 7.75, Details 0.3 mM polydeoxyribonucleotide, 100% D2O

#	Name	Isotope labeling	Type	Concentration
3	entity_1	natural abundance		0.3 mM
4	NaClO4	natural abundance		50 mM

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Release date

2019-10-10

Citation

Concerted dynamics of metallo-base pairs in an A/B-form helical transition
Schmidt, O.P., Jurt, S., Johannsen, S., Karimi, A., Sigel, R., Luedtke, N.W.
Nat. Commun. (2019), 10, 4818-4818, PubMed 31645548 , DOI 10.1038/s41467-019-12440-x , Abstract

Experiments performed 3 experiments Detail

Chemical shift validation 3 contents Detail