BMRBj - BMREntryMaster

	Total	¹H	¹³C
All	88.3 % (143 of 162)	97.8 % (91 of 93)	75.4 % (52 of 69)
Backbone	78.3 % (47 of 60)	95.8 % (23 of 24)	66.7 % (24 of 36)
Sidechain	94.7 % (108 of 114)	98.6 % (68 of 69)	88.9 % (40 of 45)
Aromatic	40.0 % (4 of 10)	80.0 % (4 of 5)	0.0 % (0 of 5)
Methyl	100.0 % (24 of 24)	100.0 % (12 of 12)	100.0 % (12 of 12)

1. entity 1

FRIMRILRVL KL

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 4 (±0.1), Details 1 mM peptide 3967, 100 mM dodecylphosphocholine, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	peptide 3967	natural abundance		1 (±0.2) mM
2	dodecylphosphocholine	natural abundance		100 (±5.0) mM

Protein Blocks Logo

Calculated from 20 models in PDB: 6RRL, Strand ID: A Detail

Release date

2019-10-10

Citation

Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens
Grafskaia, E.N., Nadezhdin, K.D., Talyzina, I.A., Polina, N.F., Podgorny, O.V., Pavlova, E.R., Bashkirov, P.V., Kharlampieva, D.D., Bobrovsky, P.A., Latsis, I.A., Manuvera, V.A., Babenko, V.V., Trukhan, V.M., Arseniev, A.S., Klinov, D.V., Lazarev, V.N.
Eur. J. Med. Chem. (2019), 180, 143-153, PubMed 31302447 , DOI 10.1016/j.ejmech.2019.06.080 , Abstract

Related entities 1. peptide 3967, : 1 : 2 : 21 : 26 entities Detail

Interaction partners 1. peptide 3967, : 1 interactors Detail

More details for 1 interactors identified by 1 citations

Experiments performed 3 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr34401_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr34401_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	172		100.0 (chain: 1, length: 12)
1	Chemical shift references	chem_shift_reference_1	OK	2		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 12, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 120
  - ¹³C chemical shifts: 52
- Completeness of assignments
  - Entity_assemble_ID: 1
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
11	LYS	HZ1	7.584
11	LYS	HZ2	7.584
11	LYS	HZ3	7.584

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	93	91	97.8
¹³C chemical shifts	69	52	75.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	24	23	95.8
¹³C chemical shifts	24	12	50.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	69	68	98.6
¹³C chemical shifts	45	40	88.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	13	13	100.0
¹³C chemical shifts	13	13	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	5	4	80.0
¹³C chemical shifts	5	0	0.0

Keywords ANTIMICROBIAL PROTEIN, Hirudo medicinalis, antimicrobial peptides, dooecylphosphocholine micelles, genome, medicinal leech, prediction algorithm

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Found 1 Document (0.594 seconds)

BMRB: 34401

Sample

Related entities 1. peptide 3967, : 1 : 2 : 21 : 26 entities Detail

Interaction partners 1. peptide 3967, : 1 interactors Detail

Experiments performed 3 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail