BMRB: 34403

2'-F-riboguanosine modified G-quadruplex with V-loop

Authors

Haase, L., Weisz, K.

Assembly

F1415

Entity

1. F1415 (polymer, Thiol state: not present), 22 monomers, 7071.443 Da Detail

GGGATGGGAC ACAXXGGACG GG

Formula weight

7071.443 Da

Source organism

synthetic construct

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 86.4 %, Completeness: 59.4 %, Completeness (bb): 53.6 % Detail

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Polymer type: polydeoxyribonucleotide

	Total	1H
All	59.4 % (111 of 187)	59.4 % (111 of 187)
Suger, PO4	53.6 % (75 of 140)	53.6 % (75 of 140)
Nucleobase	76.6 % (36 of 47)	76.6 % (36 of 47)
Aromatic	87.5 % (35 of 40)	87.5 % (35 of 40)
Methyl	100.0 % (1 of 1)	100.0 % (1 of 1)

1. entity 1

GGGATGGGAC ACAXXGGACG GG

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 1.0 mM F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	F1415	natural abundance		1.0 mM

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 1.0 mM F1415, 100% D2O

#	Name	Isotope labeling	Type	Concentration
2	F1415	natural abundance		1.0 mM

Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G1 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
3	F1415	15N 10% G1		0.2 mM

Sample #4

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G2 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
4	F1415	15N 10% G2		0.2 mM

Sample #5

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G3 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
5	F1415	15N 10% G3		0.2 mM

Sample #6

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G6 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
6	F1415	15N 10% G6		0.2 mM

Sample #7

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G17 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
7	F1415	15N 10% G17		0.2 mM

Sample #8

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G8 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
8	F1415	15N 10% G8		0.2 mM

Sample #9

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G16 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
9	F1415	15N 10% G16		0.2 mM

Sample #10

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G17 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
10	F1415	15N 10% G17		0.2 mM

Sample #11

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G20 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
11	F1415	15N 10% G20		0.2 mM

Sample #12

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% G21 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
12	F1415	15N 10% G21		0.2 mM

Sample #13

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% A9 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
13	F1415	15N 10% A9		0.2 mM

Sample #14

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% A11 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
14	F1415	15N 10% A11		0.2 mM

Sample #15

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.2 mM 15N 10% A13 F1415, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
15	F1415	15N 10% A13		0.2 mM

Sample #16

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.4 mM F1415(10MeC), 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
16	F1415(10MeC)	natural abundance		0.4 mM

Sample #17

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 313 K, pH 7, Details 0.4 mM F1415(12MeC), 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
17	F1415(12MeC)	natural abundance		0.4 mM

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Release date

2019-10-28

Citation

Sugar Puckering Drives G-Quadruplex Refolding: Implications for V-Shaped Loops
Haase, L., Dickerhoff, J., Weisz, K.
Chemistry (2019), 26, 524-533, PubMed 31609483 , DOI 10.1002/chem.201904044 , Abstract

Experiments performed 32 experiments Detail

Chemical shift validation 3 contents Detail