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Reconstructing the Origins of the HemD-like fold
Authors
Coles, M., Toledo-Patino, S., Chaubey, M., Hocker, B.
Assembly
cU3Sd
Entity
1. cU3Sd (polymer), 125 monomers, 13632.50 Da Detail

MDPKVLIMRG EGGREFLAER LRGQGVQVDY LPLDYPAGEL LARVRAERLN GLVVSSGQGL QNLYQLAAAD WPEIGRLPLF VPSPRVAEMA RELGAQRVID CRGASAPALL AALTSAALEH HHHHH


Formula weight
13632.5 Da
Source organism
Thermus thermophilus
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 95.2 %, Completeness: 87.4 %, Completeness (bb): 86.8 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All87.4 % (1230 of 1408)88.0 % (643 of 731)86.4 % (476 of 551)88.1 % (111 of 126)
Backbone86.8 % (637 of 734)88.6 % (225 of 254)85.4 % (310 of 363)87.2 % (102 of 117)
Sidechain88.6 % (697 of 787)87.6 % (418 of 477)89.7 % (270 of 301)100.0 % (9 of 9)
Aromatic61.3 % (49 of 80)70.0 % (28 of 40)51.3 % (20 of 39)100.0 % (1 of 1)
Methyl98.1 % (157 of 160)96.2 % (77 of 80)100.0 % (80 of 80)

1. entity 1

MDPKVLIMRG EGGREFLAER LRGQGVQVDY LPLDYPAGEL LARVRAERLN GLVVSSGQGL QNLYQLAAAD WPEIGRLPLF VPSPRVAEMA RELGAQRVID CRGASAPALL AALTSAALEH HHHHH

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 288 K, pH 8, Details 29 mM [U-13C; U-15N] cU3Sd, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1cU3Sd[U-13C; U-15N]29 mM

LACS Plot; CA
Referencing offset: 0.03 ppm, Outliers: 2 Detail
LACS Plot; CB
Referencing offset: 0.03 ppm, Outliers: 2 Detail
LACS Plot; HA
Referencing offset: 0.18 ppm, Outliers: 4 Detail
LACS Plot; CO
Referencing offset: 0.34 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 21 models in PDB: 6TH8, Strand ID: A Detail


Release date
2019-11-20
Citation
Reconstructing the Remote Origins of a Fold Singleton from a Flavodoxin-Like Ancestor
Toledo-Patino, S., Chaubey, M., Coles, M., Hoecker, B.
Biochemistry (2019), 58, 4790-4793, PubMed 31724394 , DOI 10.1021/acs.biochem.9b00900 ,
Related entities 1. cU3Sd, : 1 : 8 entities Detail
Experiments performed 4 experiments Detail
Chemical shift validation 3 contents Detail
Keywords FLAVOPROTEIN, HemD-like fold, flavodoxin-like fold, protein design